1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...atattaaaccaaaaaagaaattatatagacaccacaagcgaaacaaacatttttcatatgatgaaattagtactaaatcttcttttttaatgcattacagGGCATACAAGAGGCTGACAGATCTTCAGAAGGGTTTTACATCCGTTCTGGGGTTACCATTGTATTGAAAAACTCAGTAATTGAAGATGGATTCATCATAT
species | Glycine max |
transcript | GLYMA17G01900.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTGACAAAAATGCTAGAATTGGAAAGAATGTTGTCATAGCAAATTCAGAG GGCATACAAGAGGCTGACAGATCTTCAGAAGGGTTTTACATCCGTTCTGGGEST: gi|31460377|gb|CD402345.1|CD402345
genomic: TTGACAAAAATGCTAGAATTGGAAAGAATGTTGTCATAGCAAATTCAGAGgtatgctttt ... tgcattacagGGCATACAAGAGGCTGACAGATCTTCAGAAGGGTTTTACATCCGTTCTGGG
EST: TTGACAAAAATGCTAGAATTGGAAAGAATGTTGTCATAGCAAATTCAGAG GGCATACAAGAGGCTGACAGATCTTCAGAAGGGTTTTACATCCGTGTCTGGEST: gi|31469828|gb|CD411856.1|CD411856
genomic: TTGACAAAAATGCTAGAATTGGAAAGAATGTTGTCATAGCAAATTCAGAGgtatgctttt ... tgcattacagGGCATACAAGAGGCTGACAGATCTTCAGAAGGGTTTTACATCCGT-TCTGG
EST: AAAAATGCTAGAATTGGAAAGAATGTTGTCATAGCAAATTCAGAG GGCATACAAGAGGCTGACAGATCTTCAGAAGGGTTTTACATCCGTTCTGGG
genomic: AAAAATGCTAGAATTGGAAAGAATGTTGTCATAGCAAATTCAGAGgtatgctttt ... tgcattacagGGCATACAAGAGGCTGACAGATCTTCAGAAGGGTTTTACATCCGTTCTGGG
aacatttttcatatgatgaaattagtactaaatcttcttttttaatgcattacagGGCATACAAGAGGCTGACAGATCTTCAGAAGGGTTTTACATCCGTTCTGGGGTTACCATTGTATTGAAAAACTCAGTAATTGAAGATGGATTCATCATAT
tcttcttttttaat CT-rich tract
aaattagtactaaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattaaaccaaaaaagaaattatatagacaccacaagcgaaacaaacatttttcatatgatgaaattagtactaaatcttcttttttaatgcattacagGGCATACAAGAGGCTGACAGATCTTCAGAAGGGTTTTACATCCGTTCTGGGGTTACCATTGTATTGAAAAACTCAGTAATTGAAGATGGATTCATCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - aaccaaa
- - - - - - -aaagaaa
- - - - - - - - - - - - - - -caccaca
- - - - - - - - - - - - - - - - - - - - - -caaacat