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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTATCTCTTCAATGATTACTGGGAAGACATAGGGACTATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGAGCATgtgagtgtcaaatcacctcattagtaattagtagaaggtcgtgctagaggtaaacataagaaatgaatttaattattaagttcaaaaacttagtcaactataagcatgtatcatttcatctttttcattttaagatctaaagtcttattttcccagaaaagcttacttctttaattttttcag

Basic information

species Glycine max
transcript GLYMA17G01900.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01900.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g52460.1 (Oryza sativa), 5'ss of exon 10
GCTTATCTCTTCAATGATTACTGGGAAGACATAGGGACTATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGAGCATgtgagtgtcaa-atcacctcattagtaattagtagaaggtcgtgctagaggtaaacataagaaatgaatttaattattaagttcaaaaacttagtcaactataagcatgtatcatttcatctttttcattttaagatctaaagtcttattttcccagaaaagcttacttctttaattttttcag
|| ||||| |||||||||||||||||||||||||| ||||| | ||| ||||| || || |||||| | ||  |||| || ||  |  | |  |  ||   |||   | ||  |      || |||      ||  | |   | |   || ||| | |  |      ||| | |    ||| ||                                                                                 
GCATATCTTTTCAATGATTACTGGGAAGACATAGGAACTATAAAATCATTCTTTGAAGCCAATCTTTCTCTTGCTGAACAGgtatgctttactaatacaaaattgccattttatccgtattcctgcagtttatatccctctaataaatatgtaactgtacacactgcaaattgat---acttta---------------------------------------------------------------------------------

upper sequence: GLYMA17G01900.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G391936_T01 (Zea mays), 5'ss of exon 6
GCTTATCTCTTCAATGATTACTGGGAAGACATAGGGACTATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGAGCATgtgagtgtcaaatcacctcattagtaattagtagaaggtcgtgctagaggtaaacataagaaatgaatttaattattaagttcaaaaacttagtcaactataagcatgtatcatttcatctttttcattttaagatctaaagtcttattttcccagaaaagcttacttctttaattttttcag
|||||||| |||||||||||||||||||| || || ||||| |  |||||||| |||||||| ||||| ||  |||| || ||  ||||  ||| |  | | | |   |  | | |        ||    ||||   |  | | ||  ||   |||     || | |    |    ||   ||   | |                                                                           
GCTTATCTTTTCAATGATTACTGGGAAGATATTGGAACTATTAAGTCCTTCTTTGAGGCAAACCTTGCTCTTGCTGAACAGgtacgtgtttaatga--ttactggctttctgcaaa------ctcttcgagtaactctttgtactgctttgctttacgttttttatatttctctagaaaagtactgaag---------------------------------------------------------------------------

upper sequence: GLYMA17G01900.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G19220.1 (Arabidopsis thaliana), 5'ss of exon 10
GCTTATCTCTTCAATGATTACTGGGAAGACATAGGGACTATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGAGCATgtgagtgtcaaatcacctcattagtaattagtagaaggtcgtgctagaggtaaacataagaaatgaatttaattattaagttcaaaaacttagtcaactataagcatgtatcatttcatctttttcattttaagatctaaagtcttattttcccagaaaagcttacttctttaattttttcag
||||||||||| ||||| ||||||||||| ||||| || || ||||| ||||||||||| |||||||| |||||||||||||| |  | |||||   |||      || |         || |     || ||    | | ||    || || || |||  || || |        |||| || |  |  | | |||                                                                   
GCTTATCTCTTTAATGACTACTGGGAAGATATAGGAACAATAAGATCTTTCTTCGAGGCGAATCTTGCACTCACTGAGCATgtaaa-gacaaatattctcccagacaactt--------tcttttccaagatattgttcacaatcatatatagttgttatattaaata-------taact-tacgtctacaccttttag-----------------------------------------------------------------

upper sequence: GLYMA17G01900.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0020g02880.t01 (Vitis vinifera), 5'ss of exon 10
GCTTATCTCTTCAATGATTACTGGGAAGACATAGGGACTATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGAGCATgtgagtgtcaaatcacct-cattagtaattagtagaaggtcgtgctagaggtaaacataagaaatgaatttaattattaagttcaaaaacttagtcaactataagcatgtatcatttcatctttttcattttaagatctaaagtcttattttcccagaaaagcttacttctttaattttttcag
|||||||| || |||||||| ||||||||||| || || |||||||| ||||| || ||||| |||||||| ||||  |||||  || |   | ||  |  ||   | |||  |   |    |      || |     ||||       | | ||  ||    | |   |   |  |   |  | | |  |        | |||    | | | || |  | |     ||  |   ||       || ||||| |  ||||||||
GCTTATCTGTTTAATGATTATTGGGAAGACATTGGTACAATCAGATCATTCTTTGAAGCAAACCTTGCCCTTACTGCACATgtatgtattggaacatatatatatatcattgctcttaatcagcttctaagtt----ctaaggctcatgtcttatgtttggtattaggga--aaaactgtttgagggaaatgctgcccaacctt----agtctgagtttcacatggcaatgatttaagtt--ttataattcttcatgtttttcag

upper sequence: GLYMA17G01900.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ23417 (Selaginella moellendorffii), 5'ss of exon 11
GCTTATCTCTTCAATGATTACTGGGAAGACATAGGGACTATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGAGCATgtgagtgtcaaatcacctcattagtaattagtagaaggtcgtgctagaggtaaacataagaaatgaatttaattattaagttcaaaaacttagtcaactataagcatgtatcatttcatctttttcattttaagatctaaagtcttattttcccagaaaagcttacttctttaattttttcag
|| |||||||||||||| |||||||||||||| || ||||| |  || || || || || ||||| || |||||||  || || | || |           || | | || | ||     |             | | || |||  ||| |  ||                                                                                                             
GCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACTGCTCAGgt-aatgcc----tttggagttggaacttcgcagttaaacactt-----actcatacaaaaaaaaaatctctttgcag---------------------------------------------------------------------------------------------------------

upper sequence: GLYMA17G01900.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ25399 (Selaginella moellendorffii), 5'ss of exon 10
GCTTATCTCTTCAATGATTACTGGGAAGACATAGGGACTATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGAGCATgtgagtgtcaaatcacctcattagtaattagtagaaggtcgtgctagaggtaaacataagaaatgaatttaattattaagttcaaaaacttagtcaactataagcatgtatcatttcatctttttcattttaagatctaaagtcttattttcccagaaaagcttacttctttaattttttcag
|| |||||||||||||| |||||||||||||| || ||||| |  || || || || || ||||| || ||||| |  || || | || |           || | | || | |    |  ||   | |  ||  ||||  ||| |||     || |  ||                                                                                                       
GCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTTTTTGACGCTAATCTCGCTCTCACCGCTCAGgt-aatgcc-----------tttggagttggaacttcgcagttaaacacttactcatacaaaaagaaaactcttttgcag-------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31460377|gb|CD402345.1|CD402345
EST:     TAGGGACTATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGAGCAT                         CCACCAAGGTTTAGCTTTTACGATGCAGCAAAACCAATGTATACATCAAGG
genomic: TAGGGACTATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGAGCATgtgagtgtca ... attttttcagCCACCAAGGTTTAGCTTTTACGATGCAGCAAAACCAATGTATACATCAAGG
EST: gi|10235231|gb|BE804178.1|BE804178
EST:     TAGGGACTATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGAGCAT                         CCACCAAGGTTTAGCTTTTACGATGCAGCAAAACCAATGTATACATCAAGG
genomic: TAGGGACTATCAGATCCTTCTTCGAGGCAAATCTTGCCCTCACTGAGCATgtgagtgtca ... attttttcagCCACCAAGGTTTAGCTTTTACGATGCAGCAAAACCAATGTATACATCAAGG