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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGATTTCGGTGCTATTAGATCTTCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAGgcaagtcacttctctttattcttttcaaatcattttatcgaatgaaatagaaccacctcacagtaaataaacaacaacaaaaaaataacaataaaagaattatctgtcttctcatgatcatagaaattcttttgtaaaagagggaaattctaattttattccaatgactgaacag

Basic information

species Glycine max
transcript GLYMA17G01820.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01820.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0116g00020.t01 (Vitis vinifera), 5'ss of exon 4
GTGTTGATTTCGGTGCTATTAGATCTTCCAGGACTACTTTTTTTCTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAGgcaagtc-acttctctttattcttttcaaatcattttatcgaatgaaatagaaccacctcacagtaaataaacaacaacaaaaaaataacaataaaagaattatctgtcttctcatgatcatagaaattcttttgtaaaagagggaaattctaattttattccaatgactgaacag
    |||||| |||  | || |||||||| ||||| || |||||||| ||||| ||||||||||| || || |||| ||| || |||||||||||||||  | |||| || ||| |||        || ||   |  | | | | |     | | | |   |||       | ||    | ||  |               || | |||| | ||  |  | |||||                                          
--ACTGATTTTGGTATTGTTGGATCTTCCTGGACTTCTGTTTTTCTCTACATACACACTTCTTGTGCTATTTTGGGCAGAGATATATCACCAGGCAAGTAGAgttcttttgattattt--------ttctactaagggtattggtat----ttaaaatttgtaag-----gctaatccctcactttggtgag---------ctacacatgcttatgaacgtgctttta-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058229|gb|CA801143.1|CA801143
EST:     CTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAG                         GCAAGGGGTTTACCAACTGATAAGCTCAAGATAGTCTATATTTCAGTAAAT
genomic: CTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAGgcaagtcact ... gactgaacagGCAAGGGGTTTACCAACTGATAAGCTCAAGATAGTCTATATTTCAGTAAAT
EST: gi|58014541|gb|CX701283.1|CX701283
EST:     CTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCA-                         GCAANGGGGTTTACCAACTGATAAGCTCAAGATAGTCTATATTTCAGTAAA
genomic: CTCAACATATACACTTCTTGTCCTTTTCTGGGTAGAAATTTATCACCAGgcaagtcact ... gactgaacagGCAA-GGGGTTTACCAACTGATAAGCTCAAGATAGTCTATATTTCAGTAAA