1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagctctcaattcttcctcatttcaggttctttctgtgtttctttcgcccatttttttttattttttatttttatattccagTGCGTGCAGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTAAG
species | Glycine max |
transcript | GLYMA17G01820.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAG TGCGTGCAGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTAEST: gi|7796878|gb|AW782272.1|AW782272
genomic: TTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAGgttagctctc ... tatattccagTGCGTGCAGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA
EST: TTGGACTACTCAGAAGATTATTCATCTCATGAACTTCATTGTCAACGGAG TGCGTGCAGTGGTGTCTGGATTGCACAAGCTAGEST: gi|193511587|gb|FK470872.1|FK470872
genomic: TTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAGgttagctctc ... tatattccagTGCGTGCAGTGGTGTTTGGATTGCACAAGCTAG
EST: TTGGACTACTCAGAAGATTTTTTATCTCATGAACTTCATTGTCAACGGAG TGCGTGCAGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA
genomic: TTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAGgttagctctc ... tatattccagTGCGTGCAGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTA
ttctttctgtgtttctttcgcccatttttttttattttttatttttatattccagTGCGTGCAGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTAAG
tgtttctttcgcccat CT-rich tract
tttcgcccattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctctcaattcttcctcatttcaggttctttctgtgtttctttcgcccatttttttttattttttatttttatattccagTGCGTGCAGTGGTGTTTGGATTGCACAAGCTAGTTTTTCTTTTGCATCCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT