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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGATGATCATCTGAGACAAGTTTTTGGGCAGTATGGGGAGTTAGTTCATGTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGgtaatttattcattcagatatttggtgtttatcttgtgttaaattactgtctatatgtatgtcctctgattgtatcacgacatgtcatgttcatgcgacag

Basic information

species Glycine max
transcript GLYMA17G01800.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213596522|gb|DB973998.1|DB973998
EST:     CCAATTTGCGGACAG                         GAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
genomic: CCAATTTGCGGACAGgtaatttatt ... catgcgacagGAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
EST: gi|17153845|gb|BM143778.1|BM143778
EST:     GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAG                         GAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
genomic: GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGgtaatttatt ... catgcgacagGAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
EST: gi|254322516|gb|GR837930.1|GR837930
EST:     GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAG                         GAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
genomic: GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGgtaatttatt ... catgcgacagGAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
EST: gi|151399777|gb|EV269648.1|EV269648
EST:     GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAG                         GAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
genomic: GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGgtaatttatt ... catgcgacagGAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
EST: gi|51336170|gb|CO980036.1|CO980036
EST:     GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAG                         GAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
genomic: GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGgtaatttatt ... catgcgacagGAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
EST: gi|254329353|gb|GR833725.1|GR833725
EST:     GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAG                         GAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
genomic: GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGgtaatttatt ... catgcgacagGAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
EST: gi|254322517|gb|GR837931.1|GR837931
EST:     GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAG                         GAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
genomic: GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGgtaatttatt ... catgcgacagGAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
EST: gi|6848825|gb|AW351115.1|AW351115
EST:     GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAG                         GAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
genomic: GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGgtaatttatt ... catgcgacagGAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
EST: gi|254320968|gb|GR827417.1|GR827417
EST:     GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAG                         GAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
genomic: GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGgtaatttatt ... catgcgacagGAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
EST: gi|254320969|gb|GR827418.1|GR827418
EST:     GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAG                         GAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
genomic: GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGgtaatttatt ... catgcgacagGAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
EST: gi|9820559|gb|BE556069.1|BE556069
EST:     GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAG                         GAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG
genomic: GTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGgtaatttatt ... catgcgacagGAGCTGTGCAGAAGAGGCACTGCGGGTTTTGAATGGCACACTTTTAGGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGATGATCATCTGAGACAAGTTTTTGGGCAGTATGGGGAGTTAGTTCATGTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGgtaatttattcattcagatatttggtgtttatcttgtgttaaattactgtctatatgtatgtcctctgattgtatcacgacatgtcatgttcatgcgacag

- - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG