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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCATATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACTgtgcgtacttctttgcaatatagaaactactcttctttgtgcttgttcatgacctgaatttcttaatgcag

Basic information

species Glycine max
transcript GLYMA17G01800.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17153845|gb|BM143778.1|BM143778
EST:     ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACT                         ATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
genomic: ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACTgtgcgtactt ... cttaatgcagATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
EST: gi|254322516|gb|GR837930.1|GR837930
EST:     ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACT                         ATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
genomic: ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACTgtgcgtactt ... cttaatgcagATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
EST: gi|151399777|gb|EV269648.1|EV269648
EST:     ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACT                         ATTTTTGTTGGGAATTTGGACCCTAACGTCACGGATGATCATCTGAGACAA
genomic: ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACTgtgcgtactt ... cttaatgcagATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
EST: gi|192304606|gb|FG998706.1|FG998706
EST:     ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACT                         ATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
genomic: ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACTgtgcgtactt ... cttaatgcagATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
EST: gi|254329353|gb|GR833725.1|GR833725
EST:     ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACT                         ATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
genomic: ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACTgtgcgtactt ... cttaatgcagATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
EST: gi|254322517|gb|GR837931.1|GR837931
EST:     ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACT                         ATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
genomic: ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACTgtgcgtactt ... cttaatgcagATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
EST: gi|4395717|gb|AI494714.1|AI494714
EST:     ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACT                         ATTTTTGTTGGGAATNTGGATCCTAACGTCACGGATGATCATCTGAGACAA
genomic: ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACTgtgcgtactt ... cttaatgcagATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
EST: gi|6848825|gb|AW351115.1|AW351115
EST:     ATCAGANTNNTCNAGGGGCACAGAACGAGCATGATCCAAATAATACCACT                         ATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
genomic: ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACTgtgcgtactt ... cttaatgcagATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
EST: gi|254320968|gb|GR827417.1|GR827417
EST:     ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACT                         ATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
genomic: ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACTgtgcgtactt ... cttaatgcagATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
EST: gi|254320969|gb|GR827418.1|GR827418
EST:     ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACT                         ATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
genomic: ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACTgtgcgtactt ... cttaatgcagATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
EST: gi|9820559|gb|BE556069.1|BE556069
EST:     ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACT                         ATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA
genomic: ATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACCACTgtgcgtactt ... cttaatgcagATTTTTGTTGGGAATTTGGATCCTAACGTCACGGATGATCATCTGAGACAA