1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtatttctaaagggcttgcatattgttacccgatgtagtgatgtgaccattactttcacagttgataattcattgtattttctgacctttattatttcagGGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATTTGGAGTGCAGGCAT
species | Glycine max |
transcript | GLYMA17G01730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAG GGAAGGTTTACCATGACGTGGTTGGCAGTGEST: gi|24136888|gb|BU927398.1|BU927398
genomic: CGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAGgttcacattg ... attatttcagGGAAGGTTTACCATGATATGGTTGGCAGTG
EST: CGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAG GGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGGEST: gi|21888524|gb|BQ741737.1|BQ741737
genomic: CGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAGgttcacattg ... attatttcagGGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGG
EST: CGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAG GGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGG
genomic: CGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAGgttcacattg ... attatttcagGGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGG
accattactttcacagttgataattcattgtattttctgacctttattatttcagGGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATTTGGAGTGCAGGCAT
ttctgac putative branch site (score: 2)
cctttatt CT-rich tract
ataattcattgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttctaaagggcttgcatattgttacccgatgtagtgatgtgaccattactttcacagttgataattcattgtattttctgacctttattatttcagGGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATTTGGAGTGCAGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - -gcttgca
- - - - - - - - - - - -tgttacc
- - - - - - - - - - - - - - - - - - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacct