1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTGTTCGGCTTATGGGACGTGCAGCTTCACACATTACACTGGAATGTGCTTTGCAAACTCATCCGAACATTACTATTATTGGAGAAGAGgtttaccttgttcaatttttcttgtattcagtgaaatgtcagggctctcttatcaaaaatttgatttgacatgtaaatatcttatttcag
species | Glycine max |
transcript | GLYMA17G01360.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGAATGTGCTTTGCAAACTCATCCGAACATTACTATTATTGGAGAAGAG GTTGCTGCCAAGAAGATGACACTGAAGGATGTCACTGACTACATTGTTAATEST: gi|208051397|gb|GD847236.1|GD847236
genomic: TGGAATGTGCTTTGCAAACTCATCCGAACATTACTATTATTGGAGAAGAGgtttaccttg ... cttatttcagGTTGCTGCCAAGAAGATGACACTGAAGGATGTCACTGACTACATTGTTAAT
EST: TGGAATGTGCTTTGCAAACTCATCCGAACATTACTATTATTGGAGAAGAG GTTGCTGCCAAGAAGATGACACTGAAGGATGTCACTGACTACATTGTTAATEST: gi|254330861|gb|GR842126.1|GR842126
genomic: TGGAATGTGCTTTGCAAACTCATCCGAACATTACTATTATTGGAGAAGAGgtttaccttg ... cttatttcagGTTGCTGCCAAGAAGATGACACTGAAGGATGTCACTGACTACATTGTTAAT
EST: TGGAATGTGCTTTGCAAACTCATCCGAACATTACTATTATTGGAGAAGAG GTTGCTGCCAAGAAGATGACACTGAAGGATGTCACTGACTACATTGTTAAT
genomic: TGGAATGTGCTTTGCAAACTCATCCGAACATTACTATTATTGGAGAAGAGgtttaccttg ... cttatttcagGTTGCTGCCAAGAAGATGACACTGAAGGATGTCACTGACTACATTGTTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTTCGGCTTATGGGACGTGCAGCTTCACACATTACACTGGAATGTGCTTTGCAAACTCATCCGAACATTACTATTATTGGAGAAGAGgtttaccttgttcaatttttcttgtattcagtgaaatgtcagggctctcttatcaaaaatttgatttgacatgtaaatatcttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA