Sequence
atgc intronic sequence ATGC exonic sequenceGGTGGTTTTGACATGATTCGCAGTGGAAGGGACAAGATTGAAACTCCAGAGCAGgttggcctatttctctgcagatttgctataaagattgatcatatgaactcttgtactattacacatcttcaagtatggggagtaatttattttgcatgtacag
Basic information
species | Glycine max |
transcript | GLYMA17G01360.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G01360.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 4
GGTGGTTTTGACATGATTCGCAGTGGAAGGGACAAGATTGAAACTCCAGAGCAGgttggcctat----ttctctgcagatttgct-ataaagattgatcatatgaactcttgtactattacacatctt-----caagtatggggagtaatttatt-ttgcatgtacag----------------
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GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAGgtatatctttgcgcttttatgtgcaaatgcttatttaatccctttatctgcctttcagggtatttggctattttgttgcctagtttcactagcattttcttattttaaattctgtcatgtatttgagcag
upper sequence: GLYMA17G01360.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 4
GGTGGTTTTGACATGATTCGCAGTGGAAGGGACAAGATTGAAACTCCAGAGCAGgttggcctat---ttctctgcagatttgc-tataaagattgatcatatgaactcttgtact--attacacatcttcaagtatggggagtaatttattt--tgcatgtacag---------
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GGTGGATTTGATATGATCTGCAGTGGAAGGGACAAGATTGAAACACCGGAGCAGgtatgtctctgggctctggccatgtttatgttcaaatgcttatgaaa-aaactttgttactggatttcctaatctcgatcattttttctcaactacctaatacctgtgttggttgtgcag
upper sequence: GLYMA17G01360.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G04040.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTGGTTTTGACATGATTCGCAGTGGAAGGGACAAGATTGAAACTCCAGAGCAGgttggcctatttctctgcagatttgctataaagattgatcatatgaactcttgtactattacacatcttcaagtatggggagtaatttattttgcatgtacag
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GGTGGATTTGATATGATATGTAGTGGAAGAGACAAGATTGAAACTCCAGAGCAGgtagaaatgtttttcttaatgttttgtatggcg------cgcattgatgcttttatcgatggacttagtta--tattcagtttggtacattttgtag------
upper sequence: GLYMA17G01360.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G12000.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTGGTTTTGACATGATTCGCAGTGGAAGGGACAAGATTGAAACTCCAGAGCAGgttggcctatttctctgcagatttgctataaagattgatcatatgaactcttgtactattacacatcttcaagtatggggagtaatttattttgcatgtacag
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GGTGGTTTTGACATGATCTGCAGTGGAAGAGACAAGATTGAAACACCTGACCAGgttgaa-tatttttttgtggtttga----aaagatatttgttactgcttccaaagcctctatt--tcgtgcagtgagtaattatatatgcctctcatgtgcag
upper sequence: GLYMA17G01360.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 4
GGTGGTTTTGACATGATTCGCAGTGGAAGGGACAAGATTGAAACTCCAGAGCAGgttggcctatttctctgcagatttgctataaagattgatcatatgaactcttgtactattacacatcttcaagtatggggagtaatttattttgcatgtacag
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GGTGGTTTTGATATGATCTGCAGTGGGAGAGACAAGATTGAAACTCCAGAACAGgtgagatacacactcaatacatgtat-------atggttcttgtggatttgtttttcatcatttattttc-----tgagttttaatggacttttcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254330861|gb|GR842126.1|GR842126EST: GTTTTGACATGATTCGCAGTGGAAGGGACAAGATTGAAACTCCAGAGCAG TTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAGACTTGGACGGCCTTGTT
genomic: GTTTTGACATGATTCGCAGTGGAAGGGACAAGATTGAAACTCCAGAGCAGgttggcctat ... gcatgtacagTTTAAACAAGCTGAAGAAACAGTGCAGAAGCTAGACTTGGACGGCCTTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGGTTTTGACATGATTCGCAGTGGAAGGGACAAGATTGAAACTCCAGAGCAGgttggcctatttctctgcagatttgctataaagattgatcatatgaactcttgtactattacacatcttcaagtatggggagtaatttattttgcatgtacag
- - - - - - - - - - AGTGGA
- - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - GAGCAG