Sequence
atgc intronic sequence ATGC exonic sequenceCAGTGATGATCTACTTTATCTCAAGGAGCAAATGGAAGCCGAGGAGGATGCAGAGCGCCTCCTGCGTCGCACTGAAAAACGGGCATTTGCTGCATTTAAGatatccttttgtggtcattgcgacacataacaatccatgttttcttcttcatcttgggttgatttgatactgatttttatgtcctactactacaagtatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G33570.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g42540.1 (Oryza sativa), 5'ss of exon 4
CAGTGATGATCTACTTTATCTCAAGGAGCAAATGGAAGCCGAGGAGGATGCAGAGCGCCTCCTGCGTCGCACTGAAAAACGGGCATTTGCTGCATTTAAGatatccttttgtggtcattgcgacacataacaatccatgttttcttcttcatcttgggttgatttgatactgatttttatgtcctactactacaagtatc---
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CAGTGATGATTTACTGTACCTAAAAGAACAAATGGAAGCTGAGGAAGACGCAGAGCGTCTTCTTCGCCGTACTGAGAAGCGTGCATTTGCTGCTTTTAAGatatcctcttcttttagtcatagcttatgttt-tgcatagtacagt-ttcatgaaaaaaaaaaaggg-actattagctcaatatagctcaaaccagtcttatg
upper sequence: GLYMA16G33570.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G146786_T01 (Zea mays), 5'ss of exon 4
CAGTGATGATCTACTTTATCTCAAGGAGCAAATGGAAGCCGAGGAGGATGCAGAGCGCCTCCTGCGTCGCACTGAAAAACGGGCATTTGCTGCATTTAAGatatccttttgtggtcattgcgacacataacaatccatgttttcttcttcatcttg-ggttgatttgatactgatttttatgtcctact----actacaagtatc----------------------------------------------------------------------------------------
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CAGCGATGATTTGCTTTACCTGAAAGAGCAAATGGAAGCTGAAGAAGATGCAGAGCGCCTTCTTCGTCATACTGAGAAGCGGGCATTTGCTGCTTTTAAGatatcctttattaatcatcaaca-actttgcttttcctgttatacagttaatgatacggtctgattaatatggttcagttagcttttctggaaacttttcgcacctttacaattcagtttccttccgttcaaatagtgcaatagaaacatgtggtctaagctatctctttgctatctttaactctgacattac
upper sequence: GLYMA16G33570.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0039g00280.t01 (Vitis vinifera), 5'ss of exon 4
CAGTGATGATCTACTTTATCTCAAGGAGCAAATGGAAGCCGAGGAGGATGCAGAGCGCCTCCTGCGTCGCACTGAAAAACGGGCATTTGCTGCATTTAAGatatccttttgtggtcattgcgacacataacaatccatgttttcttcttcatcttgggttgatttgatactgatttttatgtcctactactacaagtatc--------------
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------------ACTCTATCTCAAGGAGCAGATGGAGGCTGAGGAGGATGCAGAACGCCTTTTACGCCGCACAGAGAAGCGTGCCTTTGCTGCATTTAAGATATCCTTTCGTgtgcctttagatttgcaactgtgtacattagggtggctgtgtcat-tggggttgagatagctcgtaatgttctggca-tgcaaattttattgcaaaaaaaag
upper sequence: GLYMA16G33570.2 (Glycine max), 5'ss of exon 4
lower sequence: PP1S402_46V6.1 (Physcomitrella patens), 5'ss of exon 4
-------CAGTGATGATCTACTTTATCTCAAGGAGCAAATGGAAGCCGAGGAGGATGCAGAGCGCCTCCTGCGTCGCACTGAAAAACGGGCATTTGCTGCATTTAAGatatccttttgtggtca--ttgcgacacataacaatccatgttttcttcttcatcttgggttgatttgatactgatttttatgtcctactactacaagtatc
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CATTGGATAGTGATGATTTGCTTTACTTAAAAGAGCAAATGGAAGCTGAGGAGGATGCGGAGCGGTTGCGGCGACGAACTGAGAAACGGGCGTTCGCAgcttttaaaatatccttatgacatttatttattatatttttctatcagtgctacaatatcaaaattggatt-atctaaaaatg--tcagaagtgatggtagag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192298082|gb|FG991362.1|FG991362EST: CAGAGCGCCTCCTGCGTCGCACTGAAAAACGGGCATTTGCTGCATTTAAG AGAGCTGCAAGTTTAGCAGATTCTTCACCCACCTCAGTACCTCTGGCATTT
genomic: CAGAGCGCCTCCTGCGTCGCACTGAAAAACGGGCATTTGCTGCATTTAAGatatcctttt ... caatgaatacAGAGCTGCAAGTTTAGCAGATTCTTCACCCACCTCAGTACCTCTGGCATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGTGATGATCTACTTTATCTCAAGGAGCAAATGGAAGCCGAGGAGGATGCAGAGCGCCTCCTGCGTCGCACTGAAAAACGGGCATTTGCTGCATTTAAGatatccttttgtggtcattgcgacacataacaatccatgttttcttcttcatcttgggttgatttgatactgatttttatgtcctactactacaagtatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC