Sequence
atgc intronic sequence ATGC exonic sequenceATAAGAAATGGGGTAAGGGAAAAGATAAGATTGACGATGAAGACATTACTTTCCAACGCATGGTTGCAAAGgttagcgcattggttcaccatccgttctgtttttatatgtgtggacgttaatattaatataatatgtactttggtacccctttgcaagtgtactttattt...
Basic information
species | Glycine max |
transcript | GLYMA16G33570.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G33570.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g42540.1 (Oryza sativa), 5'ss of exon 2
ATAAGAAATGGGGTAAGGGAAAAGATAAGATTGACGATGAAGACATTACTTTCCAACGCATGGTTGCAAAGgttag--cgcattggttcaccatccgttctgtttttatatgtgtggacgttaatattaatataatatgtactttggtacccctttgcaagtgtactttattt--
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ATAGGAAGTGGGGGAAGGGGAAGGACAAGATTGATGATGAGGACATCACCTTCCAGCGCATGGTCGCAAAGgttagaccggatcgtatcgctaat--ttctggcgttatttagataggcttgtgttctagcgt--tttctcgtttaatataactgcaaacgtgttggagattatg
upper sequence: GLYMA16G33570.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G146786_T01 (Zea mays), 5'ss of exon 2
ATAAGAAATGGGGTAAGGGAAAAGATAAGATTGACGATGAAGACATTACTTTCCAACGCATGGTTGCAAAGgttag--cgcattg--gttcaccatccgttctgtttttatatgtgtggacgttaatattaatataatatgtactttggtacccctttgcaagtgtactttattt
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ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCTTCCAGCGCATGGTTGCAAAGgttagaccgaatcgtcatgcaacgtctgttccggcttactgttttgttgtactg-catacatgta-tgctcgttttaggattttttctggattaaatgtagg--
upper sequence: GLYMA16G33570.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G73350.2 (Arabidopsis thaliana), 5'ss of exon 2
ATAAGAAATGGGGTAAGGGAAAAGATAAGATTGACGATGAAGACATTACTTTCCAACGCATGGTTGCAAAGgttagcgcattgg----ttcaccatccgttctgtttttatatgtgtg-gacgttaatattaatataatatgtactttggtacccctttgcaagtgtactttattt
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ATAAGAAATCAGG------GAAAGGTAAGATTGATGATGAAGACGTCACCTTTCAACGAATGGTTGCAAAGgttagcgcatcgtcctctccaatattcttaccgaatcttcttttgagcaatcttactgtgcacaaattgtatgcgagagaggttgtctttgtatatatct-----
upper sequence: GLYMA16G33570.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0039g00280.t01 (Vitis vinifera), 5'ss of exon 2
ATAAGAAATGGGGTAAGGGAAAAGATAAGATTGACGATGAAGACATTACTTTCCAACGCATGGTTGCAAAGgttagcgcattggttcacc-atccgttctgtttttatatgtgtggacgttaatattaatataatatgtactttggtacccctttgcaagtgtactttattt--
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ATAAGAAATGGGGAAAAGGGAAGGACAAAATTGATGATGAAGATATCACTTTCCAGCGCATGGTTGCCAAGgttagcgaatcgcttatcctatcctttttcttattcttta-gtttttatta-tttggatatgagatgtgatggtgtgccgtttt-tatgaaatttccatttgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192298082|gb|FG991362.1|FG991362EST: AAGATAAGATTGACGATGAAGACATTACTTTCCAACGCATGGTTGCAAAG GGATATTGGCTTCCTGTATTGGGTGGCTGATGCAAGCAGATGCAAGAGGTT
genomic: AAGATAAGATTGACGATGAAGACATTACTTTCCAACGCATGGTTGCAAAGgttagcgcat ... gccccggcagGGATATTGGCTTCCTGTATTGGGTGGCTGATGCAAGCAGATGCAAGAGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAAGAAATGGGGTAAGGGAAAAGATAAGATTGACGATGAAGACATTACTTTCCAACGCATGGTTGCAAAGgttagcgcattggttcaccatccgttctgtttttatatgtgtggacgttaatattaatataatatgtactttggtacccctttgcaagtgtactttattt
- - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG