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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCGGGCTGATGGGGTCAAGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGgtaagtttgttggactctatctctgagaatccgaaatctgagtaactggattttccttcagttggcctatataaattataccaataggataggtgcttga...

Basic information

species Glycine max
transcript GLYMA16G25740.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25740.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G42050.1 (Arabidopsis thaliana), 5'ss of exon 8
ACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCGGGCTGATGGGGTCAAGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGgtaagtttgttggactctatctctgagaatccgaaatctgagtaactggattttccttcagttggcctatataaattata----ccaa--taggataggtgcttga----
 |||||||||||||| || || || || ||||||| ||| |||||||| ||||||||||| || || ||||| |||||||||||||| |||||||| |||||||          || ||| ||| |       |  | | ||| | |     |||| | |    |   |||   |||  |    ||||   | |  |  | ||| |    
GCTTAAGGAACCTGTTGTCAGATCGTCATTTGTTCAGGCAGATGGGGTGAAGTTACTTGTCCCTTTAATTTCCCCAGCATCCACTCAGCAGTCTATCCAGgtaa----------ctgtatatctaatggaagtagttttcagtgaataatgcttccataaagcaggaaataagtattgcagtttccaaatcatgcaaaatccttaacgga

upper sequence: GLYMA16G25740.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0039g01610.t01 (Vitis vinifera), 5'ss of exon 8
ACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCGGGCTGATGGGGTCAAGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGgtaagtttgttggactctatctctgagaatccgaaatctgagtaactggattttccttcagttggcctatataaattataccaataggataggtgcttga
||| ||||||||  |||| || |||||||||||||  || |||||||| ||||| ||| | || || ||||| |||||||||||||| || ||||| ||||||  |||  |      |     | |  |    | | |  |  | |          | | |        |  | ||  |     ||  |           
ACTGAAGGAACCCTTGGTCAGATCTTCCTTTGTTCAAGCAGATGGGGTGAAGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAGgtagcttttgtcattattggtggttaacaagtaagaaccaatcatcgtagccaagttactgaaaatgactgcatatcttctttgtaacag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685192|gb|AW755840.1|AW755840
EST:     AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAG                         CTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
genomic: AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGgtaagtttgt ... tctgtgacagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
EST: gi|17518712|gb|BM187754.1|BM187754
EST:     AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAG                         CTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
genomic: AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGgtaagtttgt ... tctgtgacagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
EST: gi|7925310|gb|AW831397.1|AW831397
EST:     AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAG                         CTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
genomic: AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGgtaagtttgt ... tctgtgacagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
EST: gi|298167218|gb|HO010657.1|HO010657
EST:     AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAG                         CTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
genomic: AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGgtaagtttgt ... tctgtgacagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA