1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgatttatcaataaaataataaatattactaatgaaatttgtagatttcacgctgcttttttagggaacaaaaattaattgataaattcctctgtgacagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCTAGAACCCTTCCGCGACTTATTGATG
species | Glycine max |
transcript | GLYMA16G25740.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAG CTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAEST: gi|17518712|gb|BM187754.1|BM187754
genomic: AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGgtaagtttgt ... tctgtgacagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
EST: AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAG CTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAEST: gi|7925310|gb|AW831397.1|AW831397
genomic: AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGgtaagtttgt ... tctgtgacagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
EST: AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAG CTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAEST: gi|298167218|gb|HO010657.1|HO010657
genomic: AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGgtaagtttgt ... tctgtgacagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
EST: AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAG CTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
genomic: AGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGgtaagtttgt ... tctgtgacagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
tttcacgctgcttttttagggaacaaaaattaattgataaattcctctgtgacagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCTAGAACCCTTCCGCGACTTATTGATG
ttcctctgt CT-rich tract
aacaaaaattaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatttatcaataaaataataaatattactaatgaaatttgtagatttcacgctgcttttttagggaacaaaaattaattgataaattcctctgtgacagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCTAGAACCCTTCCGCGACTTATTGATG
- - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa