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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATAAAGACATGCTTCTATCCTTGTGGGACATTGTCAAAGATTGCTACTGTTGCAAATAACAGGCCAATATgtaagtgagctataatgtattgttaacatgaaaaccttgaatctttcagaattctgtttcactgttttgttgctaacaaagctagaattagactagatca...

Basic information

species Glycine max
transcript GLYMA16G23240.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23240.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0349g00020.t01 (Vitis vinifera), 5'ss of exon 4
GTATAAAGACATGCTTCTATCCTTGTGGGACATTGTCAAAGATTGCTACTGTTGCAAATAACAGGCCAATATgtaagtgagctataatgtattgttaaca------tgaaaaccttgaatct-ttcagaattctgtttcactgttttgttgctaacaaagctagaattagactagatca
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GTATAAAAACTTTCTTCTATCCTTGTGGCACATTTTCAAAAATTGCTAGTGTGGCAACTAACAGGCACATGTgtaagt-agttatgg-atactgtccaaaatttattgacgagtttgcatttatttactctgttgttacatctaataaagactgacaaatctatgtatatgttc-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193397735|gb|FK362383.1|FK362383
EST:     GTGGGACATTGTCAAAGATTGACTAACTGTTGCAAATAACAGGCCAATAT                         CTTCTGCAGAAACATGTAATGAATTGATGGCATATTCATTAATTTTANCTT
genomic: GTGGGACATTGTCAAAGATTG-CTA-CTGTTGCAAATAACAGGCCAATATgtaagtgagc ... gggttttcagCTTCTGCAGAAACATGTAATGAATTGATGGCATATTCATTAATTTTATCTT