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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAACATTGTTTATCAGTTCAGGAAGGCTCAGAGTGAAATTGACAGATACTTGCACCTTGTTCCTCTCATTTCACTAGTCGATAATAATCGAGTCAGGgtatatgctatttcttcgctgtacaattgtcttgcttaatactcattagtcattgggattattctttgaacatctttgttgctattgatcaatcattatc...

Basic information

species Glycine max
transcript GLYMA16G23240.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23240.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0349g00020.t01 (Vitis vinifera), 5'ss of exon 1
ATGGAACATTGTTTATCAGTTCAGGAAGGCTCAGAGTGAAATTGACAGATACTTGCACCTTGTTCCTCTCATTTCACTAGTCGATAATAATCGAGTCAGGgtatatgctatttcttcgctgtacaattgtcttg--cttaatactcattagtcattgggattattctttgaacatctttgttgc-tattgatcaatcattatc
 ||||||||||| || ||||||||||||||||| | ||| |||||  |||||||| |  |  | ||||| ||  | || || ||||||  ||||||||||||||    | ||| ||   | ||   || |  |    ||  ||    ||| | ||| |  | |   |     | | ||| |    | |||||      ||   
TTGGAACATTGTGTACCAGTTCAGGAAGGCTCAAAATGAGATTGATCGATACTTGAAGATCATCCCTCTTATCACCCTGGTGGATAATGCTCGAGTCAGGgtatcaaatttttgttgcttttattgttattattatttttctatgatttacttatttgcttgaggttggatgcttatttatgatattttgatggggtttt---