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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGAAGTGACTGTGGCGAGTGATGCATTTACGCAATTCAAGCATCTGCTTCTGCCTATTACGGATAGGAATCCCTATCTCTCTGAGGGTACAAGACAAgtgagtctctgtagtgtgatcatgatgatgcacttcaatttttgcatttgttcatcaagcactaacttggggttgttgttgttgtgtttttttttattttttttattag

Basic information

species Glycine max
transcript GLYMA16G23160.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9821046|gb|BE556556.1|BE556556
EST:     TTCTGCCTATTACGGATAGGAATCCCTATCTCTCTGAGGGTACAAGACAA                         GCTATAGCAACCACCTCTGCTTTAGCTAAAAAGTATGGAGCTGACATTACT
genomic: TTCTGCCTATTACGGATAGGAATCCCTATCTCTCTGAGGGTACAAGACAAgtgagtctct ... tttttattagGCTATAGCAACCACCTCTGCTTTAGCTAAAAAGTATGGAGCTGACATTACT
EST: gi|209701332|gb|BW655927.1|BW655927
EST:     TTCTGCCTATTACGGATAGGAATCCCTATCTCTCTGAGGGTACAAGACAA                         GCTATAGCAACCACCTCTGCTTTAGCTAAAAAGTATGGAGCTGACATTACT
genomic: TTCTGCCTATTACGGATAGGAATCCCTATCTCTCTGAGGGTACAAGACAAgtgagtctct ... tttttattagGCTATAGCAACCACCTCTGCTTTAGCTAAAAAGTATGGAGCTGACATTACT
EST: gi|58025360|gb|CX712101.1|CX712101
EST:     TTCTGCGTATTACGGATAGGAATCCCTATCTCTCTGAGGGTACAAGACAA                         GCTATAGCAACCACCTCTGCTTTAGCTAAAAAGTATGGAGCTGACATTACT
genomic: TTCTGCCTATTACGGATAGGAATCCCTATCTCTCTGAGGGTACAAGACAAgtgagtctct ... tttttattagGCTATAGCAACCACCTCTGCTTTAGCTAAAAAGTATGGAGCTGACATTACT
EST: gi|31466577|gb|CD408605.1|CD408605
EST:     TTCTGCCTATTACGGATAGGAATCCCTATCTCTCTGAGGGTACAAGACAA                         GTTATAGCAACCACCTCTGCTTTAGCTAAAAAGTATGGAGCTGACATTACT
genomic: TTCTGCCTATTACGGATAGGAATCCCTATCTCTCTGAGGGTACAAGACAAgtgagtctct ... tttttattagGCTATAGCAACCACCTCTGCTTTAGCTAAAAAGTATGGAGCTGACATTACT
EST: gi|22928156|gb|BU545295.1|BU545295
EST:     NNCTGCCTATTACGGATAGGAATCCCTATCTNNNTGAGGGTACAAGACAA                         GCTATAGCAACCACCTCTGCTTTAGCTAAAAAGTATGGAGCTGACATTACT
genomic: TTCTGCCTATTACGGATAGGAATCCCTATCTCTCTGAGGGTACAAGACAAgtgagtctct ... tttttattagGCTATAGCAACCACCTCTGCTTTAGCTAAAAAGTATGGAGCTGACATTACT
EST: gi|192306706|gb|FG998860.1|FG998860
EST:     TTCTGCCTATTACGGATAGGAATCCCTATCCCTCTGAGGGTACAAGACAA                         GCTATAGCAACCACCTCTGCTTTAGCTAAAAAGTATGGAGCTGACATTACT
genomic: TTCTGCCTATTACGGATAGGAATCCCTATCTCTCTGAGGGTACAAGACAAgtgagtctct ... tttttattagGCTATAGCAACCACCTCTGCTTTAGCTAAAAAGTATGGAGCTGACATTACT