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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaaaacaaaaatcaaaatgaaaaatatttatttatttactgttattcttttctcaaaaccgctaatttttagcatttgctttgaattcagCTAAGGCTAAGCCGCAGGAACCTGAAGTGACTGTGGCGAGTGATGCATTTACGCAATTCAAGCATCTGCTTCTGCCTATTACGGATAGGAATCCCTATCT

Basic information

species Glycine max
transcript GLYMA16G23160.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9821046|gb|BE556556.1|BE556556
EST:     GCTATTCTCCAGGTTCCGCAGGATCTGTCACAAAG                         CTAAGGCTAAGCCGCAGGAACCTGAAGTGACTGTGGCGAGTGATGCATTTA
genomic: GCTATTCTCCAGGTTCCGCAGGATCTGTCACAAAGgtaaaaaaaa ... ttgaattcagCTAAGGCTAAGCCGCAGGAACCTGAAGTGACTGTGGCGAGTGATGCATTTA
EST: gi|209701332|gb|BW655927.1|BW655927
EST:     CCGCCCCAAACACTCGCTATTCTCCAGGTTCCGCAGGATCTGTCACAAAG                         CTAAGGCTAAGCCGCAGGAACCTGAAGTGACTGTGGCGAGTGATGCATTTA
genomic: CCGCCCCAAACACTCGCTATTCTCCAGGTTCCGCAGGATCTGTCACAAAGgtaaaaaaaa ... ttgaattcagCTAAGGCTAAGCCGCAGGAACCTGAAGTGACTGTGGCGAGTGATGCATTTA
EST: gi|58025360|gb|CX712101.1|CX712101
EST:     TTCTCCAGGTTCCGCAGGATCTGTCACAAAG                         CTAAGGCTAAGCCGCAGGAACTTGAAGTGACTGTGGCGAGTGATGCATTTA
genomic: TTCTCCAGGTTCCGCAGGATCTGTCACAAAGgtaaaaaaaa ... ttgaattcagCTAAGGCTAAGCCGCAGGAACCTGAAGTGACTGTGGCGAGTGATGCATTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactgttattcttttctcaaaaccgctaatttttagcatttgctttgaattcagCTAAGGCTAAGCCGCAGGAACCTGAAGTGACTGTGGCGAGTGATGCATTTACGCAATTCAAGCATCTGCTTCTGCCTATTACGGATAGGAATCCCTATCT
                        cgctaat  putative branch site (score: 3)
                                       tttgcttt  putative PPT
                           taatttttagcattt  TA-rich tract