1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagtgttttttttcttctcatggttactgtgctcttgtatttattgttttatatacgtactgaaatttcgtacttaaacagGTTACGACATTGAGGATCATAACGATGCCATTCCAACAAGACCACACTCACATGCAGATGTGCCTCCTGCTGTCGCTGCAGGGCTTGGTAATTACCCTGC
species | Glycine max |
transcript | GLYMA16G23120.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTGTATTTGACCGAGAAAAGCTCGTGTTGGGATGGAAGAAATTTGATT GTTACGACATTGAGGATCATAACGATGCCATTCCAACAAGACCACACTCACEST: gi|31471124|gb|CD413152.1|CD413152
genomic: TGTTGTATTTGACCGAGAAAAGCTCGTGTTGGGATGGAAGAAATTTGATTgtcagtgttt ... acttaaacagGTTACGACATTGAGGATCATAACGATGCCATTCCAACAAGACCACACTCAC
EST: AGAAATTTGATT GTTACGACATTGAGGATCATAACGATGCCATTCCAACAAGACCACACTCACEST: gi|31309522|gb|CD394725.1|CD394725
genomic: AGAAATTTGATTgtcagtgttt ... acttaaacagGTTACGACATTGAGGATCATAACGATGCCATTCCAACAAGACCACACTCAC
EST: TGTTGTATTTGACCGAGAAAAGCTCGTGTTGGGATGGAAGAAATTTGATT GTTACGACATTGAGGATCATAACGATGCCATTCCAACAAGACCACACTCAC
genomic: TGTTGTATTTGACCGAGAAAAGCTCGTGTTGGGATGGAAGAAATTTGATTgtcagtgttt ... acttaaacagGTTACGACATTGAGGATCATAACGATGCCATTCCAACAAGACCACACTCAC
ctgtgctcttgtatttattgttttatatacgtactgaaatttcgtacttaaacagGTTACGACATTGAGGATCATAACGATGCCATTCCAACAAGACCACACTCACATGCAGATGTGCCTCCTGCTGTCGCTGCAGGGCTTGGTAATTACCCTGC
tcttgtatttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgttttttttcttctcatggttactgtgctcttgtatttattgttttatatacgtactgaaatttcgtacttaaacagGTTACGACATTGAGGATCATAACGATGCCATTCCAACAAGACCACACTCACATGCAGATGTGCCTCCTGCTGTCGCTGCAGGGCTTGGTAATTACCCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG