1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttcttttttcctctgctgtattgtatgctcattctcatgctcgttatcctaaatgattatgatgattatttatgcctcaacttctgactttgattgcagAAAACTTCATGACTGGTTACCGTGTTGTATTTGACCGAGAAAAGCTCGTGTTGGGATGGAAGAAATTTGATT
species | Glycine max |
transcript | GLYMA16G23120.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTATATCGTCTAGCAGTCGTCAAAACTGCTGAGCTAAACATAATTGGAC AAAACTTCATGACTGGTTACCGTGTTGTATTTGACCGAGAAAAGCTCGTGTEST: gi|31309522|gb|CD394725.1|CD394725
genomic: TGTATATTGTCTAGCAGTCGTCAAAACTGCTGAGCTAAACATAATTGGACgtaagtctct ... ttgattgcagAAAACTTCATGACTGGTTACCGTGTTGTATTTGACCGAGAAAAGCTCGTGT
EST: GTATATTGTCTAGCAGTCGTCAAAAACTGCTGAGCTAAACATAATTGGAC AAAACTTCATGACTGGTTACCGTGTTGTATTTGACCGAGAAAAGCTCGTGT
genomic: GTATATTGTCTAGCAGTCGTC-AAAACTGCTGAGCTAAACATAATTGGACgtaagtctct ... ttgattgcagAAAACTTCATGACTGGTTACCGTGTTGTATTTGACCGAGAAAAGCTCGTGT
tatcctaaatgattatgatgattatttatgcctcaacttctgactttgattgcagAAAACTTCATGACTGGTTACCGTGTTGTATTTGACCGAGAAAAGCTCGTGTTGGGATGGAAGAAATTTGATT
taaatgattatgatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttttttcctctgctgtattgtatgctcattctcatgctcgttatcctaaatgattatgatgattatttatgcctcaacttctgactttgattgcagAAAACTTCATGACTGGTTACCGTGTTGTATTTGACCGAGAAAAGCTCGTGTTGGGATGGAAGAAATTTGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - -ctctgct
- - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - - catgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgac