1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAGAGAATCTGTGAGACAAGAGATGCATTCTTTGCATCCGGATGACTCAAAAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttttcatgcgaaacttggtgatttgttttttgtttttaaataaaacgcaatccacatctttcccaaattcttctgtccttttgcttttgaaatt...
species | Glycine max |
transcript | GLYMA16G23090.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|207821551|gb|GD795978.1|GD795978
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: TGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGACTGAATTCAACAAEST: gi|193461473|gb|FK429334.1|FK429334
genomic: TGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGG-CTGAATTCAACAA
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|208207269|gb|GE002136.1|GE002136
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|208324720|gb|GE118882.1|GE118882
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: TATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|298179179|gb|HO027650.1|HO027650
genomic: TATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|27424005|gb|CA935525.1|CA935525
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|193599644|gb|FK551523.1|FK551523
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAA-
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTEST: gi|207789007|gb|GD760355.1|GD760355
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATT
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|193645622|gb|FK586950.1|FK586950
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGEST: gi|193621092|gb|FK570398.1|FK570398
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|208119016|gb|GD914709.1|GD914709
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGTGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|208309330|gb|GE108890.1|GE108890
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|193716888|gb|FK652108.1|FK652108
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCAAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|208041930|gb|GD841364.1|GD841364
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|193533861|gb|FK492936.1|FK492936
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAA-GGCTGAATTCAACAAGEST: gi|208176628|gb|GD979101.1|GD979101
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AATTGTGGTTCTAAAGCACAATGTAATGGCGGGTGAAGGGTCTGATACTG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|208205713|gb|GE007020.1|GE007020
genomic: AATTGTGGTTCTAAAGCACAATGTA-TGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTEST: gi|193323898|gb|FK290078.1|FK290078
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATT
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATATTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|208193455|gb|GD992886.1|GD992886
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|193684686|gb|FK622266.1|FK622266
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTT-ACCTAAAAAAGGCTGAATTCAACAAGEST: gi|193399264|gb|FK361770.1|FK361770
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|193452282|gb|FK421096.1|FK421096
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTAEST: gi|193589341|gb|FK545065.1|FK545065
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTA
EST: ATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAA-GGCTGAATTCAACAAGEST: gi|207739869|gb|GD716173.1|GD716173
genomic: ATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGEST: gi|193425865|gb|FK387408.1|FK387408
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTG
EST: ATTGTGGTTCTAAAGCACAATGTATGGCGGGTAGAAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATEST: gi|208276964|gb|GE080761.1|GE080761
genomic: ATTGTGGTTCTAAAGCACAATGTATGGCGGGT-GAA-GGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGAT
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTCGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTEST: gi|208324457|gb|GE122706.1|GE122706
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATT
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|193589804|gb|FK545168.1|FK545168
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|193353071|gb|FK313925.1|FK313925
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAGEST: gi|207807624|gb|GD776643.1|GD776643
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|208309119|gb|GE108847.1|GE108847
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|193363158|gb|FK325730.1|FK325730
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|207792790|gb|GD767468.1|GD767468
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTEST: gi|193364026|gb|FK331722.1|FK331722
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGT
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|208106908|gb|GD902399.1|GD902399
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATCTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAGEST: gi|208274822|gb|GE069714.1|GE069714
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACAAG
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAACEST: gi|193623275|gb|FK577327.1|FK577327
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAAC
EST: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG ATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAA
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagttttt ... tatgtggcagATTTCTAGATCCATTGGCGATGTTTACCTAAAAAAGGCTGAATTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAGAATCTGTGAGACAAGAGATGCATTCTTTGCATCCGGATGACTCAAAAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttttcatgcgaaacttggtgatttgttttttgtttttaaataaaacgcaatccacatctttcccaaattcttctgtccttttgcttttgaaatt
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