1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagtacaaatgtatataagttttgtcctttcagttctactcattactcaatcttacgtgcgaacatttgtattgacttttgtgcgtgtatctttttaaagGATTTGCATCTGAGCAGAAGTCCATGTCTGAGGAGGTTATTCGGAAGGCATACCAAGCCACAGAAGAAGGTTTTTTGTCAGTGGTTACCAAACAGTGGCC
species | Glycine max |
transcript | GLYMA16G23090.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCCGAGACGTCGCGCTACGTCTGTGATCATCTCTTCCAACATCTAAAAC GATTTGCATCTGAGCAGAAGTCCATGTCTGAGGAGGTTATTCGGAAGGCAT
genomic: ACCCGAGACGTCGCGCTACGTCTGTGATCATCTCTTCCAACATCTAAAACgtaatggctt ... ctttttaaagGATTTGCATCTGAGCAGAAGTCCATGTCTGAGGAGGTTATTCGGAAGGCAT
ctcaatcttacgtgcgaacatttgtattgacttttgtgcgtgtatctttttaaagGATTTGCATCTGAGCAGAAGTCCATGTCTGAGGAGGTTATTCGGAAGGCATACCAAGCCACAGAAGAAGGTTTTTTGTCAGTGGTTACCAAACAGTGGCC
tattgac putative branch site (score: 2)
tatcttttt putative PPT
tgtatctttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtacaaatgtatataagttttgtcctttcagttctactcattactcaatcttacgtgcgaacatttgtattgacttttgtgcgtgtatctttttaaagGATTTGCATCTGAGCAGAAGTCCATGTCTGAGGAGGTTATTCGGAAGGCATACCAAGCCACAGAAGAAGGTTTTTTGTCAGTGGTTACCAAACAGTGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - -cctttca
- - - - - - - - - - - - - - - - - -ctactca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tacgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgtgta