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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATGgtaagtttaatagggatatctatcataaattgggaatctaatctgtgtttcttttattgaagttctcaataattttttactgaattgtatctttgattttgttag

Basic information

species Glycine max
transcript GLYMA16G23010.3
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8825917|gb|BE209647.1|BE209647
EST:     AACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATG                         GCTTTCGTGGTGAGCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATT
genomic: AACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATGgtaagtttaa ... attttgttagGCTTTCGTGGTGAGCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATT
EST: gi|7692526|gb|AW760629.1|AW760629
EST:     AACTCCAACCTCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATG                         GCTTTCGTGGTGAGCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATT
genomic: AACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATGgtaagtttaa ... attttgttagGCTTTCGTGGTGAGCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATT
EST: gi|8825923|gb|BE209653.1|BE209653
EST:     AACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATG                         GCTTTCGTGGTGAGCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATT
genomic: AACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATGgtaagtttaa ... attttgttagGCTTTCGTGGTGAGCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATT
EST: gi|58014463|gb|CX701205.1|CX701205
EST:     ACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATG                         GCTTTCGTGGTGAGCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATT
genomic: ACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATGgtaagtttaa ... attttgttagGCTTTCGTGGTGAGCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATT