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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagaaagatgtcactccttcaagtttattagtggtatttggatgttttatgttctttatcaaggaagcacaaaagattaactcctgtattttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATG

Basic information

species Glycine max
transcript GLYMA16G23010.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8825917|gb|BE209647.1|BE209647
EST:     CAACTTTACAACCTCAGCATTCACCAACAACTTTCTAATCAGGCTTTATG                         TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
genomic: CAACTTTACAACCTCAGCATTCACCAACAACTTTCTAATCAGGCTTTATGgtatctcaca ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
EST: gi|8825923|gb|BE209653.1|BE209653
EST:     CAACTTTACAACCTCAGCATTCACCAACAACTTTCTAATCAGGCTTTATG                         TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
genomic: CAACTTTACAACCTCAGCATTCACCAACAACTTTCTAATCAGGCTTTATGgtatctcaca ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgttctttatcaaggaagcacaaaagattaactcctgtattttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATG
                             gattaac  putative branch site (score: 2)
                                           ttttcatttc  putative PPT
                                         tattttcattt  TA-rich tract