1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagattgatctaattggttattttgatttgtgcctttgtgtatcttattgtataattaatgcgttgtttgttttattctgtagGAGGAGGATGATGATGAGTAAAGATGGTGATACATGATGAAGCGTAGGTGGATGCGGGAAAAGAAAATTGTTTTGCATAGTTGTTGGGTTTAGAATTTCA
species | Glycine max |
transcript | GLYMA16G22060.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAG GAGGAGGATGATGATGGGTAAAGATGGTGATACATGATGAAGCGTAGGTGGEST: gi|192325043|gb|FK015449.1|FK015449
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAGgtagattgat ... tattctgtagGAGGAGGATGATGATGAGTAAAGATGGTGATACATGATGAAGCGTAGGTGG
EST: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGGTGAG GAGGAGGATGATGATGAGTAAAGATGGTGATACATGATGAAGCGTAGGTGGEST: gi|192307927|gb|FG998944.1|FG998944
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAGgtagattgat ... tattctgtagGAGGAGGATGATGATGAGTAAAGATGGTGATACATGATGAAGCGTAGGTGG
EST: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAG GAGGAGGATGATGATGAGTAAAGGTGGTGATACATGATGAAGCGTAGGTGGEST: gi|192307926|gb|FG998943.1|FG998943
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAGgtagattgat ... tattctgtagGAGGAGGATGATGATGAGTAAAGATGGTGATACATGATGAAGCGTAGGTGG
EST: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAG GAGGAGGATGATGATGAGTAAAGGTGGTGATACATGATGAAGCGTAGGTGGEST: gi|5058411|gb|AI736943.1|AI736943
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAGgtagattgat ... tattctgtagGAGGAGGATGATGATGAGTAAAGATGGTGATACATGATGAAGCGTAGGTGG
EST: ACGAGTCTGACAAGTCANAGTCTGAAGTCAATGATGACGAGGAAGATGAT GAGGAGGATGATGATGAGTEST: gi|208079717|gb|GD875401.1|GD875401
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAGgtagattgat ... tattctgtagGAGGAGGATGATGATGAGT
EST: CGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAAG GAGGAGGATGAEST: gi|193456025|gb|FK417073.1|FK417073
genomic: CGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGA-Ggtagattgat ... tattctgtagGAGGAGGATGA
EST: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAG GAGGAGGATGATGATGAGTEST: gi|208311788|gb|GE102682.1|GE102682
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAGgtagattgat ... tattctgtagGAGGAGGATGATGATGAGT
EST: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAG GAGGAGGATGATGATGAGTAAAGNTGGTGATACATGATGAAGC
genomic: ACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGACGAGGAAGATGAGgtagattgat ... tattctgtagGAGGAGGATGATGATGAGTAAAGATGGTGATACATGATGAAGC
tgtgcctttgtgtatcttattgtataattaatgcgttgtttgttttattctgtagGAGGAGGATGATGATGAGTAAAGATGGTGATACATGATGAAGCGTAGGTGGATGCGGGAAAAGAAAATTGTTTTGCATAGTTGTTGGGTTTAGAATTTCA
aattaat putative branch site (score: 3)
ttttattct putative PPT
tgtatcttattgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagattgatctaattggttattttgatttgtgcctttgtgtatcttattgtataattaatgcgttgtttgttttattctgtagGAGGAGGATGATGATGAGTAAAGATGGTGATACATGATGAAGCGTAGGTGGATGCGGGAAAAGAAAATTGTTTTGCATAGTTGTTGGGTTTAGAATTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA