1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCTAAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattttcgtttcgttttgttaccaaatctgtttttttttttttttttgtgttctggcgattgaggttttggtgattgtttttgtttag
species | Glycine max |
transcript | GLYMA16G22060.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCAT GTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGTEST: gi|192325043|gb|FK015449.1|FK015449
genomic: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattt ... ttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGT
EST: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCAT GTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGTEST: gi|208283280|gb|GE087216.1|GE087216
genomic: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattt ... ttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGT
EST: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCAT GTCCGAGTTCAGAGAGCAGTTCAAAGAAAGGAAGACATCCTAACAACAEST: gi|192307927|gb|FG998944.1|FG998944
genomic: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattt ... ttttgtttagGTCCGAGTTCAGAGAGCAGTTCAA-GAA-GGA-G-CATCCTAACAACA
EST: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCAT GTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGTEST: gi|192307926|gb|FG998943.1|FG998943
genomic: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattt ... ttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGT
EST: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCAT GTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGTEST: gi|17401598|gb|BM178380.1|BM178380
genomic: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattt ... ttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGT
EST: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCAT GTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGTEST: gi|5058411|gb|AI736943.1|AI736943
genomic: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattt ... ttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGT
EST: AGGACCCTAACAAGCCGAAGAGACCTNCAAGCGCTTTTCTTCGTTTTCAT GTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGTEST: gi|192297534|gb|FG989540.1|FG989540
genomic: AGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTT-CTTCGTTTTCATgtatggattt ... ttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGT
EST: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCAT GTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGTEST: gi|208239091|gb|GE037169.1|GE037169
genomic: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattt ... ttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGT
EST: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCAT GTCCGAGTTCAGAGAGCAGTTCAAGAAGGAAGACATCCTAACAACAEST: gi|10843286|gb|BF066593.1|BF066593
genomic: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattt ... ttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGA-G-CATCCTAACAACA
EST: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCAT GTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGT
genomic: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattt ... ttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCTAAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattttcgtttcgttttgttaccaaatctgtttttttttttttttttgtgttctggcgattgaggttttggtgattgtttttgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA