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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttgtatttgtaaatgaaaaaaatgacatatcggtgaagtactctcgtactgtctccaaagtctaaccatgcgtcctgttatatactgaacagTAAGCCTGAATCAAGAATATTTGGAGCAAAGACAGTTCTTGGAGCTCATCCTGCACCACGTGTAGCAGCATTTTCTTCTAAAGGCCCCAATGCTTTGAAC

Basic information

species Glycine max
transcript GLYMA16G22010.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G22010.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0044g01970.t01 (Vitis vinifera), 3'ss of exon 8
gtttgttttgtatttgtaaatgaaaaaaatgacatatcggtgaagtactctcgtactgtctccaaagtctaaccatgcgtcctgttatatac-tgaacagTAAGCCTGAATCAAGAATATTTGGAGCAAAGACAGTTCTTGGAGCTCATCCTGCACCACGTGTAGCAGCATTTTCTTCTAAAGGCCCCAATGCTTTGAAC
  || |||| || |     ||||  || ||      || |||    |   | | | | | |   |  ||| |      |   |   || ||| ||||||| || || |  || || || ||   ||||||||| ||  | ||| |||||||||| || || || |||||||||||||| ||||| |||||||| || |||
-gttattttctactctccgatgatgaagat------tcagtgtgagataattgaattattttgtatttctcatttaaggctattccatttacatgaacagAAAACCAGTTTCTAGGATTTTCCCAGCAAAGACTGTATTGGGATCTCATCCTGCTCCTCGAGTTGCAGCATTTTCTTCAAAAGGTCCCAATGCCTTAAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactctcgtactgtctccaaagtctaaccatgcgtcctgttatatactgaacagTAAGCCTGAATCAAGAATATTTGGAGCAAAGACAGTTCTTGGAGCTCATCCTGCACCACGTGTAGCAGCATTTTCTTCTAAAGGCCCCAATGCTTTGAAC
                      gtctaac  putative branch site (score: 2)
                                      tgttatata  TA-rich tract