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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGGgtatgtgtttcttttaaatgagaatttgctaccttcctgtgatctcttttactcctatttccgctagtcaagggggttttgcatgatgaataaagctaat...

Basic information

species Glycine max
transcript GLYMA16G21960.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21960.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0044g01940.t01 (Vitis vinifera), 5'ss of exon 7
AGTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGGgtatgtgtt---tcttttaaatgagaatttgctaccttcctgtgatctcttttactcctatttccgctagtcaagggggttttgcatgatgaataaagctaat
  ||    |||||||||||||||||||| |||||||| ||    ||| | ||| | || ||| |||||||  ||||  | |  ||||||||||| ||||||||||  |    || | |   |   | ||   ||  ||  |  ||   ||||   | ||   ||    ||| |      || | ||  | ||| ||||  |  
--TCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTTTCTAGAGCTATCAAGTTTACCCCCATTTTCTTTTGGGGAATATTTGGgtatgcataaaatcgtctctctttcatttacttattttaataagaaacctttattttctgcatctag-agttatttcttttcttcaataggaaaaaaggaa--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31305285|gb|CD390488.1|CD390488
EST:     AGTATATTTTTGGGGAATTTTTGG                         ATCTCCGATACCCTTTAAACATCCAATGCATGTGGTAGTGGGTAGACCAAT
genomic: AGTATATTTTTGGGGAATTTTTGGgtatgtgttt ... ttctcttcagATCTCCGATACCCTTTAAACATCCAATGCATGTGGTAGTGGGTAGACCAAT
EST: gi|31561365|gb|CD487203.1|CD487203
EST:     TTTGCGAGGGCTGTCAAG-TCTCCCCAGTATATTTTTGGGGAATTTTTGG                         ATCTCCGATACCCTTTAAACATCCAATGCATGTGGTAGTGGGTAGACCAAT
genomic: TTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGGgtatgtgttt ... ttctcttcagATCTCCGATACCCTTTAAACATCCAATGCATGTGGTAGTGGGTAGACCAAT
EST: gi|7588080|gb|AW703883.1|AW703883
EST:     GTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGG                         ATCTCCGATACCCTTTAAACATCCAATGCATGTGGTAGTGGGTAGACCAAT
genomic: GTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGGgtatgtgttt ... ttctcttcagATCTCCGATACCCTTTAAACATCCAATGCATGTGGTAGTGGGTAGACCAAT
EST: gi|6848922|gb|AW351212.1|AW351212
EST:     TTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGN                         ATCTCCGATACCCTTTAAACATCCAATGCATGTGGTAGTGGGTAGACCAAT
genomic: TTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGGgtatgtgttt ... ttctcttcagATCTCCGATACCCTTTAAACATCCAATGCATGTGGTAGTGGGTAGACCAAT
EST: gi|20497895|gb|BQ272825.1|BQ272825
EST:     TTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGG                         ATCTCCGATACCCTTTAAACATCCAATGCATGTGGTAGTGGGTAGACCAAT
genomic: TTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGGgtatgtgttt ... ttctcttcagATCTCCGATACCCTTTAAACATCCAATGCATGTGGTAGTGGGTAGACCAAT