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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGAACCACATTCAGTTTTGCCAATTGGAGTTGTTGCATTAGCTGACAACACATGTTTTATGCCTCTTCCTAAAATAAAAGTTCTTGCTAGCAGTGCGgtaaggcttttatcgactctgttttgttgtgaaggttattgaggatataatttaaaaaatttcttattacacttgacaaatag

Basic information

species Glycine max
transcript GLYMA16G21960.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21960.3 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0044g01940.t01 (Vitis vinifera), 5'ss of exon 4
TTATGAACCACATTCAGTTTTGCCAATTGGAGTTGTTGCATTAGCTGACAACACATGTTTTATGCCTCTTCCTAAAATAAAAGTTCTTGCTAGCAGTGCGgtaaggcttttatcgactctgttttgttgtgaaggttattgaggatataatttaaaaaatttcttattacacttgacaaatag---------
|||||| |||||||||||| |||||||||| ||||||||| | ||||||   ||| ||||  |||||||  | ||||| ||||| ||||| || ||||| ||||| || |   |   |     || | |       | ||      |   ||    |     ||||| |||  ||  ||| |          
TTATGAGCCACATTCAGTTCTGCCAATTGGTGTTGTTGCACTTGCTGACCTTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactctctacccttaatgcttatggccttatctgtttcatggacccttcctca---cccttataacatgtgggaaaaaaaattatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27446115|gb|CA953238.1|CA953238
EST:     ACACATGTTTTATGCCTCTTCCTAAAATAAAAGTTCTTGCTAGCAGTGCG                         ATATTTTACACACCATTTTTGAGACACATATGGACAT
genomic: ACACATGTTTTATGCCTCTTCCTAAAATAAAAGTTCTTGCTAGCAGTGCGgtaaggcttt ... tgacaaatagATATTTTACACACCATTTTTGAGACACATATGGACAT