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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTAGCAATGGTGAATTTAGTGATCCTATTATTAAGgtctggttaatacttattgtgacagagtgattcatgttctccttaattttacttttacaaggcaaataattgttttatactttgtttttcatag

Basic information

species Glycine max
transcript GLYMA16G21840.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21840.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 7
ATCAGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTAGCAATGGTGAATTTAGTGATCCTATTATTAAGgtctggttaatacttattgtgacagagtgattc------atgttctccttaattttacttttacaaggcaaataattgttttatac----tttgtttttcatag
|||||| || ||||| || |||||||||||  |||| |||||||||||||||||||| ||||| ||| | || |||||| || |||| || ||||| ||||||| |  |||| |      | |  | | |||        | || |  |   || ||  |||  |      |  |||   | |||     | ||| |||  |||
ATCAGGCAGAGCACGAAGGGATGCTGCAGCTCGGGCGATGCAGGGTTGGCACTCACAGCGTCTTCTTGGTAACGGTGAAGTTGGTGACCCGATTATCAAGgtctagg-aatattagaataggcgcactcattttgctctgtattgtgttgtcttatatctttttagattgtaacatttaataatataacatctgtcttttgtag