1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttaagacacatgtatttctcttttcatcatgagtgctgcgtgttgtacttaatttctttatctattgtatagttgacaacccatgaagtgtgttattaatttatacccatgatggaagtgtttactttggccttttggttcgtttgctgacttacctgtctctgttggtatgtctggttgggctagATCGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACT
species | Glycine max |
transcript | GLYMA16G21840.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTTAATGCTGTCAAAGTGGCACACAGCCAACCATCTAGACCACA ATCGGACACATATGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAGTEST: gi|31312392|gb|CD397595.1|CD397595
genomic: GTTAATGTTGTCAAAGTGGCACACAGTCAACCATCTAGACCACAgttaagacac ... gttgggctagATCGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAAT
EST: GACACCGTTAATGTTGTCAAAGTGGCACACAGTCAACCATCTAGACCACA ATCGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAAT
genomic: GACACCGTTAATGTTGTCAAAGTGGCACACAGTCAACCATCTAGACCACAgttaagacac ... gttgggctagATCGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAAT
cttttggttcgtttgctgacttacctgtctctgttggtatgtctggttgggctagATCGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACT
gacttac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaagacacatgtatttctcttttcatcatgagtgctgcgtgttgtacttaatttctttatctattgtatagttgacaacccatgaagtgtgttattaatttatacccatgatggaagtgtttactttggccttttggttcgtttgctgacttacctgtctctgttggtatgtctggttgggctagATCGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT