Sequence
atgc intronic sequence ATGC exonic sequence...ctccccccctctccctttcctttttcttcaagttctttttgcgctaaaaaaaatccttctgttatatgaatctcatgtttcaagtcatggtgcatcgcagGCTGTGGTCAGGTACATGGCTGATCTTGTTGAGAAGAAGGATGCTAAATTGCAGCCACTTATTAAGAAGAAAAAGGGTTGGGCTCATCATATGTGCTTCT
Basic information
species | Glycine max |
transcript | GLYMA16G21580.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22540302|gb|BU090145.1|BU090145EST: AGAATCCTCTTGAAATACCTCCAAGACATGTTGCTGAAAAGGGAGCACAG GCTGTGGTCAGGTACATGGCTGATCTTGTTGAGAAGAAGGATGCTAAATTG
genomic: AGAATCCTCTTGAAATACCTCCAAGACATGTTGCTGAAAAGGGAGCACAGgtaactaact ... tgcatcgcagGCTGTGGTCAGGTACATGGCTGATCTTGTTGAGAAGAAGGATGCTAAATTG
EST:
gi|6095253|gb|AW119920.1|AW119920EST: GAAATACCTCCAAGACATGTTGCTGAAAAGGGAGCACAG GCTGTGGTCAGGTACATGGCTGATCTTGTTGAGAAGAAGGATGCTAAATTG
genomic: GAAATACCTCCAAGACATGTTGCTGAAAAGGGAGCACAGgtaactaact ... tgcatcgcagGCTGTGGTCAGGTACATGGCTGATCTTGTTGAGAAGAAGGATGCTAAATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaaaaatccttctgttatatgaatctcatgtttcaagtcatggtgcatcgcagGCTGTGGTCAGGTACATGGCTGATCTTGTTGAGAAGAAGGATGCTAAATTGCAGCCACTTATTAAGAAGAAAAAGGGTTGGGCTCATCATATGTGCTTCT
cgctaaa putative branch site (score: 3)
ttatatgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctccccccctctccctttcctttttcttcaagttctttttgcgctaaaaaaaatccttctgttatatgaatctcatgtttcaagtcatggtgcatcgcagGCTGTGGTCAGGTACATGGCTGATCTTGTTGAGAAGAAGGATGCTAAATTGCAGCCACTTATTAAGAAGAAAAAGGGTTGGGCTCATCATATGTGCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
ctccccc
- - - - ctctccc
- - - - - - - - - - - - -cttcaag
- - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcatgg