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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggggttcttcattaaagccattagttgttatgaactcatgcttatctggtggagccaaatcagtttgactcttcttcttggctaaaatttattttattgtaatctatgtcaataataataaataatagttatattaattgtttcttgcacgttttatgttgttgattttgtttttgcagAGTTGATGGTTCTTGGTTTCCTTTCACTGCTTCTGACTTTCGGGCAGAGTTACATTGTTAGAATATGCATTCCTGCCGATGTGGCAGACAAATTGTTGCC

Basic information

species Glycine max
transcript GLYMA16G21510.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21510.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 2
gtaggggttcttcattaaagccattagttgttatgaactcatgcttatc-tggtggagccaaatcagtttgactcttcttcttggctaaaatttattttattgtaatctatgtcaataataataaataatagttatattaattgtttcttgcacgttttatgttgttgattttgtttttgcagAGTTGATGGTTCTTGGTTTCCTTTCACTGCTTCTGACTTTCGGGCAGAGTTACATTGTTAGAATATGCATTCCTGCCGATGTGGCAGACAAATTGTTGCC
                                         ||   ||| || | || |      |  ||   | |  ||       | | ||| ||  |||    | | | | | | ||    ||| |||   | | | | ||    ||  |||    |  || ||||      | |||||||||||||||| || |||||| ||||||| || |||||||| ||||||| ||  ||||| | ||| || |||||||   | |  |||||||   || | ||
----------------------------------------gtgagaatcatgattgaacgtttctaactttgttttctttggatatcacactttgttccatttc--tgtgttttatttatttagaatcata--caaagttagtgacctttttacg----aaatttttgacccacatattgcagAGTTGATGGTCCTGGGTTTCATTTCACTACTCCTGACTTTTGGGCAGAATTTTATTGTCAAAATCTGTATTCCTGAAAAGGCTGCAGACACTATGCTACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193730822|gb|FK663136.1|FK663136
EST:     AAACACAAGAAGGCTTTGCTTGAGGCTTTGGAAAAGGTCAAAGCTG                         AGTTGATGGTTCTTGGTTTCCTTTCACTGCTTCTGACTTTCGGGCAGAGTT
genomic: AAACACAAGAAGGCTTTGCTTGAGGCTTTGGAAAAGGTCAAAGCTGgtaggggttc ... gtttttgcagAGTTGATGGTTCTTGGTTTCCTTTCACTGCTTCTGACTTTCGGGCAGAGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagttatattaattgtttcttgcacgttttatgttgttgattttgtttttgcagAGTTGATGGTTCTTGGTTTCCTTTCACTGCTTCTGACTTTCGGGCAGAGTTACATTGTTAGAATATGCATTCCTGCCGATGTGGCAGACAAATTGTTGCC
                                         ttttgttttt  CT-rich tract
     tatattaattgtttct  TA-rich tract