Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGTCCAAGGGATTCCTCTTGTTCAAGGCTCAGACAGATATTTTTGGTTTGGTCGGCCTCAGTTAGTTCTTCACCTTATCCATTTTGCTTTGTTCCAGgtattcaattggtttcctttaaacagaatcatgaacaaatgtttagaagatggaatggaacagacaacacacgtataactgttcaggtttagagttgaaa...

Basic information

species Glycine max
transcript GLYMA16G21510.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21510.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 11
AGTTGTCCAAGGGATTCCTCTTGTTCAAGGCTCAGACAGATATTTTTGGTTTGGTCGGCCTCAGTTAGTTCTTCACCTTATCCATTTTGCTTTGTTCCAGgtattcaattg-gtttcc---tttaaacagaatcatgaacaaatgtttagaagatggaatggaacagacaacacacg-tataactgttca--ggtttagagttgaaa--------------------------------------------------------------------------------
||| |||||||||||||| ||||| ||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||| |||||| |||||| | |   |    |||    | |||   | |  |    |||| ||   || |   |   |||           |  | |   ||||||  |  ||     ||  |                                                                                
AGTGGTCCAAGGGATTCCGCTTGTGCAAGGCTCAGACAAATATTTTTGGTTTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagcagcacctccatactaaaatgaactagttcgtaaattttgtaaaaacttagcagaattctttgagttcaatgtccttgttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcag