1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tccttttggatagttcggatatctttgttcattctgtgtaatgtgttggtaatatttccttgtggttgagctttgaagtcatggtcctttggtattgcagGAGATGGAAGAACAAAGACCCCACTCAGCCCAACAATTGCAGGTTCACAGGATAGACCGTTTAGCCTGGGGCATGGCCTTAGTGATAACAGTGGAAACAT
species | Glycine max |
transcript | GLYMA16G21210.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCCCATCTCCTTTCCGGTTTCAGCGGTGGAGTCCTATGAATTCTG GAGATGGAAGAACAAAGACCCCACTCAGCCCAACAATTGCAGGTTCACAGGEST: gi|254322710|gb|GR835532.1|GR835532
genomic: ATCCCATCTCCTTTCCGGTTTCAGCGGTGGAGTCCTATGAATTCTGgtaagctacg ... ggtattgcagGAGATGGAAGAACAAAGACCCCACTCAGCCCAACAATTGCAGGTTCACAGG
EST: TAATATCCCATCTCCTTTCCGGTTTCAGCGGTGGAGTCCTATGAATTCTG GAGATGGAAGAACAAAGACCCCACTCAGCCCAACAATTGCAGGTTCACAGG
genomic: TAATATCCCATCTCCTTTCCGGTTTCAGCGGTGGAGTCCTATGAATTCTGgtaagctacg ... ggtattgcagGAGATGGAAGAACAAAGACCCCACTCAGCCCAACAATTGCAGGTTCACAGG
ttggtaatatttccttgtggttgagctttgaagtcatggtcctttggtattgcagGAGATGGAAGAACAAAGACCCCACTCAGCCCAACAATTGCAGGTTCACAGGATAGACCGTTTAGCCTGGGGCATGGCCTTAGTGATAACAGTGGAAACAT
tcctttg CT-rich tract
aatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttttggatagttcggatatctttgttcattctgtgtaatgtgttggtaatatttccttgtggttgagctttgaagtcatggtcctttggtattgcagGAGATGGAAGAACAAAGACCCCACTCAGCCCAACAATTGCAGGTTCACAGGATAGACCGTTTAGCCTGGGGCATGGCCTTAGTGATAACAGTGGAAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
-ccttttg
- - - - - - - - - - - - - - -cattctg
- - - - - - - - - - - - - - - - - - - - - gtgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtc