1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttcgagcatgttagaactaagtgatctttattttattttgtttcgatacacactcagtgatccttatatcaacttttaatcaatttccttgtttgttcagGGATTTATTGCATCTGCCCTTAATTATGGACTCATTACATGGTGCAACAAGATCTTGGGGCCAGCCATGGTTGCTCTTTATAATCCACTTCAACCTGGAG
species | Glycine max |
transcript | GLYMA16G21200.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
atacacactcagtgatccttatatcaacttttaatcaatttccttgtttgttcagGGATTTATTGCATCTGCCCTTAATTATGGACTCATTACATGGTGCAACAAGATCTTGGGGCCAGCCATGGTTGCTCTTTATAATCCACTTCAACCTGGAG
ttttaat putative branch site (score: 3)
tttccttgtttgttc putative PPT
ttatatcaacttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgagcatgttagaactaagtgatctttattttattttgtttcgatacacactcagtgatccttatatcaacttttaatcaatttccttgtttgttcagGGATTTATTGCATCTGCCCTTAATTATGGACTCATTACATGGTGCAACAAGATCTTGGGGCCAGCCATGGTTGCTCTTTATAATCCACTTCAACCTGGAG
- - -gcatgtt
- - - - - - - - ctaagtg
- - - - - - - - - - - - - - - - - - - - - - - - cacactc