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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGTTTCTTATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCGGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtttctctcattttagtttctacatattattgtgttttgttaatttatctttttttctggaacacacaactccactctattgtgcacagaagtttgtacattaattaaattaatatacatcaggacatagagtaatgtgcaccttgataaacttattcatgcag

Basic information

species Glycine max
transcript GLYMA16G21200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21200.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G45370.2 (Arabidopsis thaliana), 5'ss of exon 3
TTTTGTTTCTTATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCGGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtttctctcattttag--tttctacatattattgtgttttgttaatttatctttttttctggaacacacaactccactctattgtgcacagaagtttgtacattaattaaattaatatacatcaggacatagagtaatgtgcaccttgataaacttattcatgcag
|  | |||||||| || |||   || || |||||||||||||||||||| || || ||| | |  || |||||||| ||||| ||||||||  ||||||||| ||| |   |    | |   || ||  | | | |     ||||| |  | |  |||   |||            ||  ||   ||||  ||||                                                                           
TACTATTTCTTATGGGTTTATCTTACACGAATCCAACTTATGCTGCTGCTATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGGgtgagtatgagtttcctcaacattactgtaaaatgtgaaaatttgtaatataaagtttcaatct----tttgatggtcttcttctttgtatacag---------------------------------------------------------------------------

upper sequence: GLYMA16G21200.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G19185.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTTGTTTCTTATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCGGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtttctctcattttagtttctacatattattgtgttttgttaatttatctttttttctggaacacacaactccactctattgtgcacagaagtttgtacattaattaaattaatatacatcaggacatagagtaatgtgcaccttgataaacttattcatgcag
| || |||||||| ||  | |  || || ||||| |||||||||||||| ||||| ||| |||  |||||||| || ||||| |||||||| |||||||||| ||| |           | ||||  |||    |    ||  |  || |  |||   || |||       |  ||  ||   | ||   |||                                                                           
TGTTATTTCTTATCGGTCTTACATACACAAATCCCACTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTCACCTTTCTCTTGGCTGTCATGATGGGgtgagtat-----------gattctttataagggttctcttcttagatatgccttcagttttggttttttgatgtctcctacttggtatgcag---------------------------------------------------------------------------