Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209706062|gb|BW680832.1|BW680832EST: TCCTGCTGGTTACCCCCCAGCTGGTTATCCTGGTTCATCACATGCACCAG GTTCTCATGGGCACGGCGGTATGGGAGCAATGCTCGCTGGGGGTGCTGCTG
genomic: TCCTGCTGGTTACCCCCCAGCTGGTTATCCTGGTTCATCACATGCACCAGgtatatatat ... ttgccaccagGTTCTCATGGGCACGGCGGTATGGGAGCAATGCTCGCTGGGGGTGCTGCTG
EST:
gi|15000991|gb|BI321805.1|BI321805EST: TCCTGCTGGTTACCCCCCAGCTGGTTATCCTGGTTCATCACATGCACCAG GTTCTCATGGGCACGGCGGTATGGGAGCAATGC
genomic: TCCTGCTGGTTACCCCCCAGCTGGTTATCCTGGTTCATCACATGCACCAGgtatatatat ... ttgccaccagGTTCTCATGGGCACGGCGGTATGGGAGCAATGC
EST:
gi|213617161|gb|DB963560.1|DB963560EST: TCCTGCTGGTTACCCCCCAGCTGGTTATCCTGGTTCATCACATGCACCAG GTTCTCATGGGCACGGCGGTATGGGAGCAATGCTCGCTGGGGG
genomic: TCCTGCTGGTTACCCCCCAGCTGGTTATCCTGGTTCATCACATGCACCAGgtatatatat ... ttgccaccagGTTCTCATGGGCACGGCGGTATGGGAGCAATGCTCGCTGGGGG
EST:
gi|209723671|gb|BW662566.1|BW662566EST: TCCTGCTGGTTACCCCCCAGCTGGTTATCCTGGTTCATCACATGCACCAG GTTCTCATGGGCACGGCGGTATGGGAGCAATGCTCGCTGGGGGTGCTGCTG
genomic: TCCTGCTGGTTACCCCCCAGCTGGTTATCCTGGTTCATCACATGCACCAGgtatatatat ... ttgccaccagGTTCTCATGGGCACGGCGGTATGGGAGCAATGCTCGCTGGGGGTGCTGCTG
EST:
gi|213588665|gb|DB957564.1|DB957564EST: TCCTGCTGGTTACCCCCCAGCTGGTTATCCTGGTTCATCACATGCACCAG GTTCTCATGGGCACGGCGGTATGGGAGCAATGCTCGCTGGGGG
genomic: TCCTGCTGGTTACCCCCCAGCTGGTTATCCTGGTTCATCACATGCACCAGgtatatatat ... ttgccaccagGTTCTCATGGGCACGGCGGTATGGGAGCAATGCTCGCTGGGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagaattgttgtccttggaagtttttttaaccaagttctctgtttttgccaccagGTTCTCATGGGCACGGCGGTATGGGAGCAATGCTCGCTGGGGGTGCTGCTGCGGCTGCTGCTGCTTATGGTGCTCACCATGTCTCTCATGGCTCCCATGG
ttttaac putative branch site (score: 2)
ttctctgtttttgcc putative PPT
aagtttttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgatttatgcattggctattggaaaattttgtgctgctagttatgagaattgttgtccttggaagtttttttaaccaagttctctgtttttgccaccagGTTCTCATGGGCACGGCGGTATGGGAGCAATGCTCGCTGGGGGTGCTGCTGCGGCTGCTGCTGCTTATGGTGCTCACCATGTCTCTCATGGCTCCCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT