Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgaaactttagtactgaattggagattccctgttctgtgtttgttggttttcacaattttacctgactctgctagcatgattccttatcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGAATCTGACAAAGGAATTTTTTCACACCTTGCTCATGGGGTAGCTGGTGCA

Basic information

species Glycine max
transcript GLYMA16G20780.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213610652|gb|DB961127.1|DB961127
EST:     GTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
genomic: GTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCGgtgagttctc ... tcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
EST: gi|209706062|gb|BW680832.1|BW680832
EST:     TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
genomic: TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCGgtgagttctc ... tcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
EST: gi|15000991|gb|BI321805.1|BI321805
EST:     CTCAATTACAACATCGTATTCTGCAAATTCAAACCG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
genomic: CTCAATTACAACATCGTATTCTGCAAATTCAAACCGgtgagttctc ... tcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
EST: gi|213617161|gb|DB963560.1|DB963560
EST:     TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
genomic: TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCGgtgagttctc ... tcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
EST: gi|9564466|gb|BE473975.1|BE473975
EST:     TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
genomic: TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCGgtgagttctc ... tcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
EST: gi|209704867|gb|BW673478.1|BW673478
EST:     TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
genomic: TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCGgtgagttctc ... tcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
EST: gi|207795893|gb|GD764118.1|GD764118
EST:     TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
genomic: TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCGgtgagttctc ... tcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
EST: gi|209723671|gb|BW662566.1|BW662566
EST:     TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
genomic: TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCGgtgagttctc ... tcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
EST: gi|105637380|gb|DY577130.1|DY577130
EST:     CTCAATTACAACATCGTATTCTGCAAATTCAAACCG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
genomic: CTCAATTACAACATCGTATTCTGCAAATTCAAACCGgtgagttctc ... tcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
EST: gi|193590014|gb|FK544706.1|FK544706
EST:     TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
genomic: TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCGgtgagttctc ... tcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
EST: gi|213588665|gb|DB957564.1|DB957564
EST:     TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCG                         GGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA
genomic: TTCTGTTGTATTTTCTCAATTACAACATCGTATTCTGCAAATTCAAACCGgtgagttctc ... tcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttggttttcacaattttacctgactctgctagcatgattccttatcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGAATCTGACAAAGGAATTTTTTCACACCTTGCTCATGGGGTAGCTGGTGCA
                  acctgac  putative branch site (score: 3)
                                      ttccttatc  putative PPT
     ttttcacaatttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttgaaactttagtactgaattggagattccctgttctgtgtttgttggttttcacaattttacctgactctgctagcatgattccttatcatcatcagGGTCTTGGTTTTCTGAAAGATGGGAGGTGGCAAGGACAAGCATCATGATGAATCTGACAAAGGAATTTTTTCACACCTTGCTCATGGGGTAGCTGGTGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - ttccctg
- - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgat