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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTATTTTTATATTGCAAGTCAAGCTCCTCTTCTTGTTTCTGTGATAGGTGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAATgtaagttttgttggtcttgatttgagatttttctttaaatttgtctactatttgatgttgatacccataaagtattatgtattgctttcaatcattttct...

Basic information

species Glycine max
transcript GLYMA15G42750.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254324424|gb|GR833849.1|GR833849
EST:     TGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAAT                         GGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
genomic: TGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAATgtaagttttg ... aaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
EST: gi|254324425|gb|GR833850.1|GR833850
EST:     GCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTTCTGAAAT                         GGGTACCTGAGAAAGAACCCTGCACTGTGCATTCTGTCGTTGTTGTAATAA
genomic: GCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAG-TTTTCTGAAATgtaagttttg ... aaaatttcagGGGTACCTGAGAAAGAA-CCTGCACTGTGCATTCTGTCGTTGTTGTAATAA
EST: gi|208294132|gb|GE092621.1|GE092621
EST:     CACTTGATAACCCCAAGTTTTCTGAAAT                         GGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
genomic: CACTTGATAACCCCAAGTTTTCTGAAATgtaagttttg ... aaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
EST: gi|21601143|gb|BQ611474.1|BQ611474
EST:     TGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAAT                         GGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
genomic: TGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAATgtaagttttg ... aaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA