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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtaattgtgaactgtttttttttttttttgtgtgtgttttattgtaaactgtgtttgctaacattggtttctttattgtcttttaatcaaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAAGTGCATGTGTTAAATGGTAGATGGACATGCTATGAGGGTATAAACTTAA

Basic information

species Glycine max
transcript GLYMA15G42750.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254324424|gb|GR833849.1|GR833849
EST:     TGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAAT                         GGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
genomic: TGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAATgtaagttttg ... aaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
EST: gi|254324425|gb|GR833850.1|GR833850
EST:     GCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTTCTGAAAT                         GGGTACCTGAGAAAGAACCCTGCACTGTGCATTCTGTCGTTGTTGTAATAA
genomic: GCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAG-TTTTCTGAAATgtaagttttg ... aaaatttcagGGGTACCTGAGAAAGAA-CCTGCACTGTGCATTCTGTCGTTGTTGTAATAA
EST: gi|208294132|gb|GE092621.1|GE092621
EST:     CACTTGATAACCCCAAGTTTTCTGAAAT                         GGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
genomic: CACTTGATAACCCCAAGTTTTCTGAAATgtaagttttg ... aaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
EST: gi|21601143|gb|BQ611474.1|BQ611474
EST:     TGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAAT                         GGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
genomic: TGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAATgtaagttttg ... aaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaactgtgtttgctaacattggtttctttattgtcttttaatcaaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAAGTGCATGTGTTAAATGGTAGATGGACATGCTATGAGGGTATAAACTTAA
                        tttctttattgtcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgtaattgtgaactgtttttttttttttttgtgtgtgttttattgtaaactgtgtttgctaacattggtttctttattgtcttttaatcaaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAAGTGCATGTGTTAAATGGTAGATGGACATGCTATGAGGGTATAAACTTAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - -tgtgaac
- - - - - - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - aactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctaac