1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgtaattgtgaactgtttttttttttttttgtgtgtgttttattgtaaactgtgtttgctaacattggtttctttattgtcttttaatcaaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAAGTGCATGTGTTAAATGGTAGATGGACATGCTATGAGGGTATAAACTTAA
species | Glycine max |
transcript | GLYMA15G42750.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAAT GGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAAEST: gi|254324425|gb|GR833850.1|GR833850
genomic: TGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAATgtaagttttg ... aaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
EST: GCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTTCTGAAAT GGGTACCTGAGAAAGAACCCTGCACTGTGCATTCTGTCGTTGTTGTAATAAEST: gi|208294132|gb|GE092621.1|GE092621
genomic: GCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAG-TTTTCTGAAATgtaagttttg ... aaaatttcagGGGTACCTGAGAAAGAA-CCTGCACTGTGCATTCTGTCGTTGTTGTAATAA
EST: CACTTGATAACCCCAAGTTTTCTGAAAT GGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAAEST: gi|21601143|gb|BQ611474.1|BQ611474
genomic: CACTTGATAACCCCAAGTTTTCTGAAATgtaagttttg ... aaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
EST: TGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAAT GGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
genomic: TGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAATgtaagttttg ... aaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAA
gtaaactgtgtttgctaacattggtttctttattgtcttttaatcaaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAAGTGCATGTGTTAAATGGTAGATGGACATGCTATGAGGGTATAAACTTAA
tttctttattgtcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtaattgtgaactgtttttttttttttttgtgtgtgttttattgtaaactgtgtttgctaacattggtttctttattgtcttttaatcaaaatttcagGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAAGTGCATGTGTTAAATGGTAGATGGACATGCTATGAGGGTATAAACTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - -tgtgaac
- - - - - - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - aactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctaac