1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttacacgtaagcatgccatatattattcttcatacacattctccgttagccttggatatttaaactgttgacctctgttgttttcatgaatgttgtgcagACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCTATGCTAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTCCAAGGC
species | Glycine max |
transcript | GLYMA15G40750.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAG ACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCEST: gi|209700869|gb|BW683099.1|BW683099
genomic: ATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAGgtattccttt ... tgttgtgcagACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGC
EST: ATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAG ACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCEST: gi|192301270|gb|FG990190.1|FG990190
genomic: ATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAGgtattccttt ... tgttgtgcagACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGC
EST: ATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAG ACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCEST: gi|192298646|gb|FG988557.1|FG988557
genomic: ATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAGgtattccttt ... tgttgtgcagACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGC
EST: ATGTGGCATATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAG ACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCEST: gi|213612205|gb|DB956886.1|DB956886
genomic: ATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAGgtattccttt ... tgttgtgcagACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGC
EST: ATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAG ACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAAEST: gi|192296353|gb|FG991591.1|FG991591
genomic: ATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAGgtattccttt ... tgttgtgcagACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAA
EST: ATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAG ACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGC
genomic: ATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAGgtattccttt ... tgttgtgcagACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGC
ttagccttggatatttaaactgttgacctctgttgttttcatgaatgttgtgcagACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCTATGCTAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTCCAAGGC
tgttgac putative branch site (score: 3)
atatttaaactgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacacgtaagcatgccatatattattcttcatacacattctccgttagccttggatatttaaactgttgacctctgttgttttcatgaatgttgtgcagACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCTATGCTAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTCCAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
ttacacg
- - - - - -catgcca
- - - - - - - - - - - - - - - catacac
- - - - - - - - - - - - - - - - - - - - - - - - -ccttgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgttg