Sequence
atgc intronic sequence ATGC exonic sequenceGAATTTTCTCCCGGATCTAATGGTCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAGgtttgttatccttaaatctttcaggctatattttacataagagcatgcttcctggtttaccctctttggactcatgcttctgttttgcttgtagacaatg...
Basic information
species | Glycine max |
transcript | GLYMA14G39220.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G39220.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g08600.1 (Oryza sativa), 5'ss of exon 4
GAATTTTCTCCCGGATCTAATGGTCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAGgtttg-----ttatccttaaatctttcaggctatattttacataagagcatgcttcctggtttaccctctttggactcatgcttctgttttgcttgtagacaatg
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GAATTCTCCCCTGGATCTAATGGTCGCATGACAACCATGGGTGTTTATGTGCGTGATCTTATACTTGGACAGgtctgcctcttcattctttgtgctttcagtatagaaataaccaataaacacactttttctcttacaaattaacagttgttgtgctaaagtatcttttaaa-----
upper sequence: GLYMA14G39220.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G37370.2 (Arabidopsis thaliana), 5'ss of exon 4
GAATTTTCTCCCGGATCTAATGGTCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAGgtttgttatccttaaatctttcaggctatattttacataagagcatgcttcctggtttaccctctttggactcatgcttctgttttgcttgtagacaatg
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GAGTTTTCACCAGGATCAAATGGACGGATGACGACAATGGGTGTTTATgtacgtgatttgctgcttggactggtgagtcac----aagtcttt-atattagatggt-caaattttcctgtcttctg-tgaattctccatggaaaactgatttttg-----------------
upper sequence: GLYMA14G39220.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G37370.4 (Arabidopsis thaliana), 5'ss of exon 5
GAATTTTCTCCCGGATCTAATGGTCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAGgtttgttatccttaaatctttcaggctatattttacataagagcatgcttcctggtttaccctctttggactcatg-cttctgttttgcttgtagacaatg------
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GAGTTTTCACCAGGATCAAATGGACGGATGACGACAATGGGTGTTTATGTACGTGATTTGCTGCTTGGACTGgtgagtcac----aagtcttt-atattagatggt-caaattttcctgtcttctg-tgaattctccatggaaaactgatttttggctgggcagacttggatgcatctgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6455394|gb|AW186077.1|AW186077EST: TCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTTCTTG-ACAG TATTATTTCGACACACTGTTTCCTCGCATCCCTGTTCCTGTATTGCGGCA
genomic: TCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTT-CTTGGACAGgtttgttatc ... gctgttgcagTATTATTTCGACACACTGTTTCCTCGCATCCCTGTTCCTGTATTGCGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATTTTCTCCCGGATCTAATGGTCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAGgtttgttatccttaaatctttcaggctatattttacataagagcatgcttcctggtttaccctctttggactcatgcttctgttttgcttgtagacaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctt