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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTCATATTGCTGGAACTAAGGGGAAGGCATCAACAGCTGCTTTTGTATCTAATATTCTGAGGAATGAAGGTTATTCTGTTGGTTGTTACACTAGgtgaagtttctctaccatttaaatatgtcttatttttgtataattgcatctgcttgtgattcgtcttcaactatatattctttatagttttgcacatcatggacagcaggctttatttttctcaag

Basic information

species Glycine max
transcript GLYMA14G31620.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G31620.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G41480.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTGTTCATATTGCTGGAACTAAGGGGAAGGCATCAACAGCTGCTTTTGTATCTAATATTCTGAGGAATGAAGGTTATTCTGTTGGTTGTTACACTAGgtgaagt-ttctctaccatttaaatatgtcttatttttgtataattgcatctgcttgtgattcgt--cttcaactatatattctttatagttttgcacatcatggacagcaggctttatttttctcaag
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GTTGTTCATGTTGCTGGAACTAAGGGAAAAGGATCAACTTCTGCTTTTCTCTCTAATATCTTACGAGCTGGAGGATATTCTGTTGGTTGTTATTCTAGgtaaagtattgactttggattaaagttttattgtattt-tgagtttgaatct-ttcatggttacttacatgagttttttgttcttcattgcag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213608687|gb|DB968974.1|DB968974
EST:     GTATCTAATATTCTGAGGAATGAAGGCTATTCTGTTGGTTGTTACAC---                         CAGTCCACATATCCTGACCATCCGGGAGCGCATTTTACTGGGAAAATCCGG
genomic: GTATCTAATATTCTGAGGAATGAAGGTTATTCTGTTGGTTGTTACACTAGgtgaagtttc ... ttttctcaagCAGTCCACATATCCTGACCATCCGGGAGCGCATTTTACTGGGAAAATCCGG