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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggaagttaaaatgggcattttatgcttgggctttagggatgtttttgtactttcagttgattttatgtagttgatggaagtgctcactccaattctagGCTGTTCATATTGCTGGAACTAAGGGGAAGGCATCAACAGCTGCTTTTGTATCTAATATTCTGAGGAATGAAGGTTATTCTGTTGGTTGTTACACTAG

Basic information

species Glycine max
transcript GLYMA14G31620.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G31620.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G41480.1 (Arabidopsis thaliana), 3'ss of exon 1
atggaagttaaaatgggcattttatgcttgggctttagggatgtttttgtactttcagttgattttatgtagttgatggaagtgctcactc------caattctagGCTGTTCATATTGCTGGAACTAAGGGGAAGGCATCAACAGCTGCTTTTGTATCTAATATTCTGAGGAATGAAGGTTATTCTGTTGGTTGTTACACTAG
    |  || | ||  | |||    | ||  |  ||| | || ||||  |  ||   ||| ||  |  || |  | ||  | |    | |         ||| |||| ||||||| |||||||||||||||| || | ||||||  |||||||| | ||||||||  |  |   || ||| |||||||||||||||||  ||||
-ctaatctttagatttggatt---cgtttttgtgttatgcatattttgtt--ttctggtttatgattagtggaaggtgagattaacaagtagggcagtgattatagGTTGTTCATGTTGCTGGAACTAAGGGAAAAGGATCAACTTCTGCTTTTCTCTCTAATATCTTACGAGCTGGAGGATATTCTGTTGGTTGTTATTCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213608687|gb|DB968974.1|DB968974
EST:     GAATGAGACGCCTCATGGAGCGTTTTGGTAACCCTCACTCCAAGTTCAAG                         GCTGTTCATATTGCTGGAACTAAGGGGAAGGGATCAACAGCTGCTTTTGTA
genomic: GAATGAGATGCCTCATGGAGCGTTTTGGTAACCCTCACTCCAAGTTCAAGgtttcattcc ... ccaattctagGCTGTTCATATTGCTGGAACTAAGGGGAAGGCATCAACAGCTGCTTTTGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtactttcagttgattttatgtagttgatggaagtgctcactccaattctagGCTGTTCATATTGCTGGAACTAAGGGGAAGGCATCAACAGCTGCTTTTGTATCTAATATTCTGAGGAATGAAGGTTATTCTGTTGGTTGTTACACTAG
                                     tgctcac  putative branch site (score: 2)
                                       ctcactcc  CT-rich tract
             ttgattttat  TA-rich tract