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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCAGAAATCTGCAGAGCTACTTCTTGATTTAAAAGTGAATTCCATAATTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAGgtaggctcactcttggtactacatagtttcatcatgccagattcctagttctatcatgtcaaattcctatttcctagtttaatccattaattgcaagtat...

Basic information

species Glycine max
transcript GLYMA12G09100.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09100.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0061g01340.t01 (Vitis vinifera), 5'ss of exon 7
TCCCAGAAATCTGCAGAGCTACTTCTTGATTTAAAAGTGAATTCCATAATTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAGgtaggctcactcttggtactacatagtttcat----catgccagattcctagttctatcatg----tcaaattcctatttcctagtttaatccattaattgcaagtat---------------
 |||| ||| |||| ||||||||||||||||| || ||||  | |||||||||||| ||||| |  || | ||||| ||||||||| | |||||||   ||| | |||  ||   |  |    |   ||||    ||   || |||| |  |  |   |||    ||||||||| | | |  || |   || | | ||| ||| |                 
GCCCAAAAAACTGCTGAGCTACTTCTTGATTTGAAGGTGAGCTGCATAATTAGCAGCCCTAAGATTGCCTCTGTTGAGACAGCCACAACCATCTCCAGAgtaagatcatcctcaatgttcttgatcatcatataacaattcatattctttctgttgaaatgagtatcaaattcc-actgcagagctc--tctacttattccaactggttgacttgcttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8670367|gb|BE191474.1|BE191474
EST:     TTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAG                         GTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTT
genomic: TTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAGgtaggctcac ... atgaatttagGTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTT
EST: gi|17519519|gb|BM188561.1|BM188561
EST:     TTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAG                         GTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTT
genomic: TTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAGgtaggctcac ... atgaatttagGTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTT
EST: gi|51335983|gb|CO979849.1|CO979849
EST:     TTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATNNCCCAG                         GTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTT
genomic: TTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAGgtaggctcac ... atgaatttagGTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTT
EST: gi|120497211|gb|EH225378.1|EH225378
EST:     TTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAG                         GTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTT
genomic: TTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAGgtaggctcac ... atgaatttagGTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTT