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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgcatccaatcatcagaaataagtgggcaaaagttatttcatctgaccttttgcatgtataacagTCCCAGAAATCTGCAGAGCTACTTCTTGATTTAAAAGTGAATTCCATAATTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAG

Basic information

species Glycine max
transcript GLYMA12G09100.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09100.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0061g01340.t01 (Vitis vinifera), 3'ss of exon 6
gtactgcatcca-atcatcagaa------ataagtgggc--aaaagttatttcatctgacctttt-----gcatgtataacagTCCCAGAAATCTGCAGAGCTACTTCTTGATTTAAAAGTGAATTCCATAATTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAG
||||  |||| | |||||  | |      ||   | ||   |||||  || | ||||||  || |     ||||  | ||||| |||| ||| |||| ||||||||||||||||| || ||||  | |||||||||||| ||||| |  || | ||||| ||||||||| | |||||||   
gtacaacatctatatcatttgcatattgtattgtttggttaaaaaggaatatgatctgattttcttgtgcgcatacacaacagGCCCAAAAAACTGCTGAGCTACTTCTTGATTTGAAGGTGAGCTGCATAATTAGCAGCCCTAAGATTGCCTCTGTTGAGACAGCCACAACCATCTCCAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8670367|gb|BE191474.1|BE191474
EST:     TTTTTCCTTTTGGTGGTGATCAACCATTGAACATGCTCGGAGTCATACAG                         TCCCAGAAATCTGCAGAGCTACTTCTTGATTTAAAAGTGAATTCCATAATT
genomic: TTTTTCCTTTTGGTGGTGATCAACCATTGAACATGCTCGGAGTCATACAGgtactgcatc ... tgtataacagTCCCAGAAATCTGCAGAGCTACTTCTTGATTTAAAAGTGAATTCCATAATT
EST: gi|17519519|gb|BM188561.1|BM188561
EST:     TCCTTTTGGTGGTGATCAACCATTGAACATGCTCGGAGTCATACAG                         TCCCAGAAATCTGCAGAGCTACTTCTTGATTTAAAAGTGAATTCCATAATT
genomic: TCCTTTTGGTGGTGATCAACCATTGAACATGCTCGGAGTCATACAGgtactgcatc ... tgtataacagTCCCAGAAATCTGCAGAGCTACTTCTTGATTTAAAAGTGAATTCCATAATT
EST: gi|120497211|gb|EH225378.1|EH225378
EST:     TTTTTCCTTTTGGTGGTGATCAACCATTGAACATGCTCGGAGTCATACAG                         TCCCAGAAATCTGCAGAGCTACTTCTTGATTTAAAAGTGAATTCCATAATT
genomic: TTTTTCCTTTTGGTGGTGATCAACCATTGAACATGCTCGGAGTCATACAGgtactgcatc ... tgtataacagTCCCAGAAATCTGCAGAGCTACTTCTTGATTTAAAAGTGAATTCCATAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcagaaataagtgggcaaaagttatttcatctgaccttttgcatgtataacagTCCCAGAAATCTGCAGAGCTACTTCTTGATTTAAAAGTGAATTCCATAATTAGCAGTCCTAACAAAGCTTGTGTTGGGACAGCCACGATCATCTCCCAG
                              atctgac  putative branch site (score: 3)
                  aaaagttatttcat  TA-rich tract