Sequence
atgc intronic sequence ATGC exonic sequenceAGTCGGCGACGCTTTCAACAATGGCCGTTACATCGTGCAGTCCAAACTCGGTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCAATTCGgtgccgccatttttcaacacttttctgttttgtctttttttatcgacaaatgttattttgttagttttgttagaattgtccgttggagttggtggattcg...
Basic information
species | Glycine max |
transcript | GLYMA12G08900.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G08900.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g53720.2 (Oryza sativa), 5'ss of exon 1
AGTCGGCGACGCTTTCAACAATGGCCGTTACATCGTGCAGTCCAAACTCGGTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCAATTCGgtgccgcca----tttttcaacacttttctgttttgtctttttttatcgacaaatgt-tattttgttagttttgttagaattgtccgttggagttggtggattcg
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CGTCGGGGACTCGTTCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGACACCGGCCACTCCgtgcgttcgaatcccttttgccccccccccccccccttaaatttcctcgtggaatgggcgttccccccttttcccttcctagattcgtgatgatttgtgg-----
upper sequence: GLYMA12G08900.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G009843_T02 (Zea mays), 5'ss of exon 2
AGTCGGCGACGCTTTCAACAATGGCCGTTACATCGTGCAGTCCAAACTCGGTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCAATTCGgtgccgccatttttcaacacttttctgttttgtcttt--ttttatcgacaaatgttattt-tgttagttttgttagaattgtccgttggagttggtggattcg
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CGTCGGAGACTCCTTCAAGCAGGGCACCTACGTCGTGCAGTCTAAGCTCGGATGGGGCCACTTCTCCACCGTCTGGCTTGCCTGGGACGAAGCCCATTCCgtac-gtaatctaacatctcgagatatcttcgtgttcaattccaatgattcgtgttgtcgatctggatgcggtttatcctgttcgctgctgctgtttgcct--
upper sequence: GLYMA12G08900.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G22840.1 (Arabidopsis thaliana), 5'ss of exon 1
AGTCGGCGACGCTTTCAACAATGGCCGTTACATCGTGCAGTCCAAACTCGGTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCAATTCGgt--gccgccatttttcaacacttttctgttttgtctttttttatcgacaaatgttattttgttagtt--ttgttagaattgtccg-ttggagttggtggattcg-
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AGTCGGTGATACTTTTAAGAATGGATCTTATGTCATTCAAAGTAAGCTTGGTTGGGGACATTTCTCCACTGTCTGGCTCGCTTGGGACACTCTCAACTCTgtaagtcactacttt----cacttctatgcttcgt-ttctcagagaatcaattttagggtttttagatagtagggaaaaggaactggcttgagctag-ggtttagg
upper sequence: GLYMA12G08900.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0061g01050.t01 (Vitis vinifera), 5'ss of exon 1
AGTCGGCGACGCTTTCAACAATGGCCGTTACATCGTGCAGTCCAAACTCGGTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCAATTCGgtgccgccatttttcaacacttttctgttttgtctttttttatcgac-aaatgttattttgttagttttgttagaatt----gtccgttggagttggtggattcg
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GATCGGGGATACCTTCAAGAATGGGCGCTATGTGGTGCAGGCCAAGCTCGGTTGGGGACATTTCTCAACCGTGTGGCTCGCTTGGGATACTCAAAAATCCgtatg-----tttctactcccctcctgtttcgtcgaagagaaaaagttggaagggaaggaaaaaaaaaagagaaaattttggatctctatgtttttttgaatgtcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192301637|gb|FG994373.1|FG994373EST: GTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCAATTCG CATTATGTAGCCCTTAAAATTCAGAAGAGTGCACAGCACTATACTGAAGCC
genomic: GTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCAATTCGgtgccgccat ... ttgtttgcagCATTATGTAGCCCTTAAAATTCAGAAGAGTGCACAGCACTATACTGAAGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTCGGCGACGCTTTCAACAATGGCCGTTACATCGTGCAGTCCAAACTCGGTTGGGGCCATTTTTCCACCGTCTGGCTCGCTTGGGACACTCTCAATTCGgtgccgccatttttcaacacttttctgttttgtctttttttatcgacaaatgttattttgttagttttgttagaattgtccgttggagttggtggattcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggtgg