Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtatatatgggatctctaatattctccatgtttttcttatattttagtcatttttttattcatttttgtgattgaaattgggtgttttggtttttggcagGAAGGGAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTATCATGGGTGGTCTTTTGATGGGTGTGGATCTTGTGTTAAGATACCTCAGGCTGCATCTG

Basic information

species Glycine max
transcript GLYMA12G08740.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08740.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G44880.1 (Arabidopsis thaliana), 3'ss of exon 1
gtatatatgggatctctaatattctc-catgtttttcttatattttagtcatttttttattcatttttgtgattgaaattgggtgttttggtttttggcagGAAGGGAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTATCATGGGTGGTCTTTTGATGGGTGTGGATCTTGTGTTAAGATACCTCAGGCTGCATCTG
 |    |          ||  || |    | | |  |  |  ||||   | ||   | ||| || | | ||  |     | | ||  |||   ||  | ||||||| ||| | |||||  ||||  | ||||| ||||| |||||||| ||||| |||| |||||||||||||||   || ||| |||||||||||  || 
atgagcaaaaagaagtaaactttgttgtgtatgtaaccaaagttttgagc-ttgactcattgatgtgtttgtgtatgtgttgatgcattgtggttatgtagGAAGGAAGGTTGGATGAGAATGGACACTTGCAATGTTCGTATCATGGATGGTCATTTGGTGGGTGTGGATCTTGCACTAGGATTCCTCAGGCTGCTACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209719731|gb|BW669238.1|BW669238
EST:     AATGGGTTGCTTTTGATGACAAATGCCCCCATCGTCTTGCCCCTTTGTCT                         GAAGGGAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTATCAT
genomic: AATGGGTTGCTTTTGATGACAAATGCCCCCATCGTCTTGCCCCTTTGTCTgtgagtataa ... tttttggcagGAAGGGAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTATCAT
EST: gi|11412088|gb|BF424099.1|BF424099
EST:     AATGGGTTGCTTTTGATGACAAATGCCCCCATCGTCTTGCCCCTTTGTCT                         GAAGGGAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTATCATGGGTGG
genomic: AATGGGTTGCTTTTGATGACAAATGCCCCCATCGTCTTGCCCCTTTGTCTgtgagtataa ... tttttggcagGAAGGGAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTATCATGGGTGG
EST: gi|254333273|gb|GR850523.1|GR850523
EST:     AATGGGTTGCTTTTGATGACAAATGCCCCCATCGTCTTGCCCCTTTGTCT                         GAAGGGAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTATCATGGGTGG
genomic: AATGGGTTGCTTTTGATGACAAATGCCCCCATCGTCTTGCCCCTTTGTCTgtgagtataa ... tttttggcagGAAGGGAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTATCATGGGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcatttttttattcatttttgtgattgaaattgggtgttttggtttttggcagGAAGGGAGGATTGATGAAGATGGGAAGTTGCAGTGTTCTTATCATGGGTGGTCTTTTGATGGGTGTGGATCTTGTGTTAAGATACCTCAGGCTGCATCTG
                                             ttttt  CT-rich tract
     tttttttattcatttt  TA-rich tract