1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgattgaatgaatggcatgcttgaaattgcattacaaaatgataattttatagtagaaaattgttaatatgataaaaattcctattttttggtacaacagGAGACGTTTGAGGAGACATTCTACTACGTTCAAAACCCATGAACATGAACCTCTAGAAAATTTGTTCGAGTTAGAGGATGCTACATATCTTGTCACTCAA
species | Glycine max |
transcript | GLYMA12G08580.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTTCTGCTTCCAAGAATACAAGCAAAGACAAAGTTAAAGACAATGG GAGACGTTTGAGGAGACATTCTACTACGTTCAAAACCCATGAACATGAACC
genomic: TCTTCTTCTGCTTCCAAGAATACAAGCAAAGACAAAGTTAAAGACAATGGgttagttcac ... ggtacaacagGAGACGTTTGAGGAGACATTCTACTACGTTCAAAACCCATGAACATGAACC
ttttatagtagaaaattgttaatatgataaaaattcctattttttggtacaacagGAGACGTTTGAGGAGACATTCTACTACGTTCAAAACCCATGAACATGAACCTCTAGAAAATTTGTTCGAGTTAGAGGATGCTACATATCTTGTCACTCAA
tgttaat putative branch site (score: 3)
ttttttg putative PPT
tagaaaattgttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattgaatgaatggcatgcttgaaattgcattacaaaatgataattttatagtagaaaattgttaatatgataaaaattcctattttttggtacaacagGAGACGTTTGAGGAGACATTCTACTACGTTCAAAACCCATGAACATGAACCTCTAGAAAATTTGTTCGAGTTAGAGGATGCTACATATCTTGTCACTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - tgaatga
- - - - - - - gcatgct
- - - - - - - - - - - - - - gcattac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa