1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtaggataggcccaaaacaatgctttccctttccctttatttttccctcaatctctcttatcatcatcataaatgaactggaacctctctatttttgtagGAAAAAGTGGAGATTGACTGCGAAAAGAATCCTACATTATCACAGTTACAG
species | Glycine max |
transcript | GLYMA12G08580.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATTTTGTGGAGGGCTGCTTTGATTAAAGGAAAGAACGTGGACGTGCAG GAAAAAGTGGAGATTGACTGCGAAAAGAATCCTACATCATCACAGTTACAGEST: gi|18734665|gb|BM528315.1|BM528315
genomic: AAATTTTGTGGAGGGCTGCTTTGATTAAAGGAAAGAACGTGGACGTGCAGgtatgttatg ... atttttgtagGAAAAAGTGGAGATTGACTGCGAAAAGAATCCTACATTATCACAGTTACAG
EST: AAATTTTGTGGAGGGCTGCTTTGATTAAAGGAAAGAACGTGGACGTGCAG GAAAAAGTGGAGATTGACT
genomic: AAATTTTGTGGAGGGCTGCTTTGATTAAAGGAAAGAACGTGGACGTGCAGgtatgttatg ... atttttgtagGAAAAAGTGGAGATTGACT
cctcaatctctcttatcatcatcataaatgaactggaacctctctatttttgtagGAAAAAGTGGAGATTGACTGCGAAAAGAATCCTACATTATCACAGTTACAG
cctctctatttttgt CT-rich tract
tatttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggataggcccaaaacaatgctttccctttccctttatttttccctcaatctctcttatcatcatcataaatgaactggaacctctctatttttgtagGAAAAAGTGGAGATTGACTGCGAAAAGAATCCTACATTATCACAGTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - cccaaaa
- - - - - - - - -caatgct
- - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctct